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SPONGE

Bioc current

Sparse Partial Correlations On Gene Expression

v1.34.1 · software · GPL (>=3)
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Release Lineage

Entered 3.6 · Oct 31, 2017

Current · Requires R 4.6

1.0 In 18 of 49 releases 3.23

Description

This package provides methods to efficiently detect competitive endogeneous RNA interactions between two genes. Such interactions are mediated by one or several miRNAs such that both gene and miRNA expression data for a larger number of samples is needed as input. The SPONGE package now also includes spongEffects: ceRNA modules offer patient-specific insights into the miRNA regulatory landscape.

Code

Code metrics have not been computed for this package yet.

Topics

Software › AssayDomain › GeneExpression
Software › AssayDomain › Transcription
Software › BiologicalQuestion › GeneRegulation
Software › BiologicalQuestion › NetworkInference
Software › ResearchField › Transcriptomics
Software › ResearchField › SystemsBiology
Software › StatisticalMethod › Regression
RandomForest
MachineLearning

Depended on by (3)

Bioconductor (3)

miRspongeR mirTarRnaSeq ceRNAR

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