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RIPSeeker

Bioc removed

RIPSeeker: a statistical package for identifying protein-associated transcripts from RIP-seq experiments

v1.28.0 · GPL-2
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Release Lineage

Entered 2.12 · Apr 4, 2013

Removed after 3.11 · Apr 28, 2020

1.0 In 15 of 49 releases 3.23

Description

Infer and discriminate RIP peaks from RIP-seq alignments using two-state HMM with negative binomial emission probability. While RIPSeeker is specifically tailored for RIP-seq data analysis, it also provides a suite of bioinformatics tools integrated within this self-contained software package comprehensively addressing issues ranging from post-alignments processing to visualization and annotation.

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Topics

Software › Technology › Sequencing
Software › Technology › Sequencing › RIPSeq

Depended on by (1)

Bioconductor (1)

RIPSeekerData

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