MUGAExampleData
Bioc currentExample {M}ouse {U}niversal {G}enotyping {A}rray data for genome reconstruction and quantitative trait locus mapping.
Release Lineage
Entered 3.0 · Oct 14, 2014
Current · Requires R 4.6
Description
This package contains example data for the MUGA array that is used by the R package DOQTL.
None published for Bioconductor
Call graph
Open call graph →Code intelligence has not been computed for this package yet.
Code
Structure
Lines of code
658
Files
28
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
0
Internal functions
0
Testing
Has tests
No
Test-to-code ratio
–
testthat edition
–
Docs
Roxygen coverage
–
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
–
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.10.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
24
First release
2014-12-02
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 11includes a package overview page
- Examples that run
- 100%11 run in a plain check
- Exported functions with examples
- not tracked
- Documented parameters
- not tracked
- Return-value docs
- not tracked
- Help pages citing references
- 9%
- User Manual PDF
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| F01.genotype.probs | data.frame | 7,656 × 36 | No other package |
| FinalReport1 | vector | 753,994 elements | No other package |
| FinalReport2 | vector | 377,002 elements | No other package |
| Samples1 | vector | 97 elements | No other package |
| Samples2 | vector | 49 elements | No other package |
| call.rate.batch | data.frame | 141 × 3 | No other package |
| geno | matrix | 141 × 7,854 | No other package |
| model.probs | array | 141 × 8 × 7,654 | No other package |
| pheno | data.frame | 149 × 142 | No other package |
| x | data.frame | 141 × 7,854 | No other package |
| y | data.frame | 141 × 7,854 | No other package |
Topics
Suggested by (1)
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("MUGAExampleData")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.