MMAPPR2
Bioc removedMutation Mapping Analysis Pipeline for Pooled RNA-Seq
Release Lineage
Entered 3.10 · Oct 30, 2019
Removed after 3.19 · May 1, 2024
Description
MMAPPR2 maps mutations resulting from pooled RNA-seq data from the F2 cross of forward genetic screens. Its predecessor is described in a paper published in Genome Research (Hill et al. 2013). MMAPPR2 accepts aligned BAM files as well as a reference genome as input, identifies loci of high sequence disparity between the control and mutant RNA sequences, predicts variant effects using Ensembl's Variant Effect Predictor, and outputs a ranked list of candidate mutations.
None published for Bioconductor
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People
- Jonathon Hill maintainer
- Nathaniel Jenkins author
- Kyle Johnsen author
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