InSituType
Bioc removedAn R package for performing cell typing in SMI and other single cell data
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Description
Insitutype is an algorithm for performing cell typing in single cell spatial transcriptomics data, such as is generated by the CosMx platform. It can perform supervised cell typing from reference profiles, unsupervised clustering, or semi-supervised cell typing in which cells both reference cell types and de novo clusters are fit.
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People
- David Ross author maintainer
- Patrick Danaher author
- Zhi Yang author
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