ExploreModelMatrix
Bioc currentGraphical Exploration of Design Matrices
Release Lineage
Entered 3.11 · Apr 28, 2020
Current · Requires R 4.6
Description
Given a sample data table and a design formula, ExploreModelMatrix generates an interactive application for exploration of the resulting design matrix. This can be helpful for interpreting model coefficients and constructing appropriate contrasts in (generalized) linear models. Static visualizations can also be generated.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
7 2 exported
Complexity
20.1 avg / 70 max
Call network
7 nodes / 6 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,232
Files
28
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
2
Internal functions
5
Testing
Has tests
Yes
Test-to-code ratio
0.38
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
5.3%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
13
First release
2020-08-03
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 7 (5 internal)includes a package overview page
- Examples that run
- 100%2 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 77%
- Return-value docs
- 100%
- Help pages citing references
- 0%
Repository practices
6 development-tooling and community-health practices detected across 3 families in the upstream repository
Checks run against github.com/csoneson/exploremodelmatrix on 2026-10-18.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
GitHub Pages site last deployed 2026-04-28 · The repository has a site deploy workflow
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| interface_overview | – | – | – |
Topics
Suggested by (1)
People
- Charlotte Soneson author maintainer
- Florian Geier author
- Michael Love author
- Federico Marini author
- Michael Stadler author
Cite
Cite this package
Run in R for the authors' entry:
citation("ExploreModelMatrix")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.12688/f1000research.24187.2.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.