DNAZooData
Bioc currentDNA Zoo data package
Release Lineage
Entered 3.17 · Apr 26, 2023
Current · Requires R 4.6
Description
DNAZooData is a data package giving programmatic access to genome assemblies and Hi-C contact matrices uniformly processed by the [DNA Zoo Consortium](https://www.dnazoo.org/). The matrices are available in the multi-resolution `.hic` format. A URL to corrected genome assemblies in `.fastq` format is also provided to the end-user.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
6 2 exported
Complexity
3.3 avg / 6 max
Call network
6 nodes / 5 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
315
Files
14
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
2
Internal functions
4
Testing
Has tests
Yes
Test-to-code ratio
0.07
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.2
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
7
First release
2023-04-25
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 2
- Examples that run
- 100%2 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- not tracked
- Return-value docs
- 100%
- Help pages citing references
- 0%
- DNAZooData HTML
Repository practices
4 development-tooling and community-health practices detected across 2 families in the upstream repository
Checks run against github.com/js2264/dnazoodata on 2026-10-22.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
GitHub Pages site last deployed 2023-04-28
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| dnazoo | data.frame | 345 × 8 | No other package |
Topics
Depended on by (1)
Bioconductor (1)
People
- Jacques Serizay author maintainer
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("DNAZooData")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.