DAPARdata
Bioc currentData accompanying the DAPAR and Prostar packages
Release Lineage
Entered 3.3 · May 4, 2016
Current · Requires R 4.6
Description
Mass-spectrometry based UPS proteomics data sets from Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssie D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianferani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O, Schaeffer C, Coute Y, Gonzalez de Peredo A. Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods. Data Brief. 2015 Dec 17;6:286-94 and Giai Gianetto, Q., Combes, F., Ramus, C., Bruley, C., Coute, Y., Burger, T. (2016). Calibration plot for proteomics: A graphical tool to visually check the assumptions underlying FDR control in quantitative experiments. Proteomics, 16(1), 29-32.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
2 1 exported
Complexity
1 avg / 1 max
Call network
2 nodes / 0 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,101
Files
66
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
1
Internal functions
1
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.4.0
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
21
First release
2016-06-20
Latest release
2026-04-28
Avg cadence
181 days
Cold removal rate
100%
Dep drift
5
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 11
- Examples that run
- 100%1 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- not tracked
- Return-value docs
- 0%
- Help pages citing references
- 91%
Repository practices
4 development-tooling and community-health practices detected across 3 families in the upstream repository
Checks run against github.com/edyp-lab/dapardata on 2026-10-11.
The R CMD check workflow runs on Linux, macOS and Windows
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| Exp1_R25_pept | – | – | – |
| Exp1_R25_prot | – | – | – |
| Exp1_R2_pept | – | – | – |
| Exp1_R2_prot | – | – | – |
| Exp2_R100_pept | – | – | – |
| Exp2_R100_prot | – | – | – |
| Exp2_R10_pept | – | – | – |
| Exp2_R10_prot | – | – | – |
| Exp2_R2_pept | – | – | – |
| Exp2_R2_prot | – | – | – |
| samples_Exp1_R2 | data.frame | 6 × 3 | No other package |
| samples_Exp1_R25 | data.frame | 6 × 3 | No other package |
| samples_Exp2_R10 | data.frame | 6 × 3 | No other package |
| samples_Exp2_R100 | data.frame | 6 × 3 | No other package |
| samples_Exp2_R2 | data.frame | 6 × 3 | No other package |
Topics
Depended on by (2)
People
- Samuel Wieczorek maintainer author
- Florence Combes author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("DAPARdata")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.