BREW3R.r
Bioc currentR package associated to BREW3R
Release Lineage
Entered 3.19 · May 1, 2024
Current · Requires R 4.6
Description
This R package provide functions that are used in the BREW3R workflow. This mainly contains a function that extend a gtf as GRanges using information from another gtf (also as GRanges). The process allows to extend gene annotation without increasing the overlap between gene ids.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
11 1 exported
Complexity
2.7 avg / 9 max
Call network
11 nodes / 16 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,628
Files
27
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
1
Internal functions
10
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
1.20
testthat edition
3
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
3
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
5
First release
2024-05-14
Latest release
2026-04-28
Avg cadence
175 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
- Lucille Lopez-Delisle author maintainer