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AHPubMedDbs

Bioc current

SQLites, tibbles, and data.tables for AnnotationHub

v1.8.0 · annotation · Artistic-2.0

Release Lineage

Entered 3.15 · Apr 27, 2022

Current · Requires R 4.6

1.0 In 9 of 49 releases 3.23

Description

Supplies AnnotationHub with some preprocessed sqlite, tibble, and data.table datasets of PubMed. All the datasets are generated by our Snakemake workflow [pubmed-workflow](https://github.com/rikenbit/pubmed-workflow). For the details, see the README.md of pubmed-workflow.

Advisories

None published for Bioconductor

Code intelligence has not been computed for this package yet.

Code

Code metrics have not been computed for this package yet.

Documentation

Help pages and examples are not tracked yet for this package.

VignettesYes · 1NEWSYesWebsitenot tracked

Repository practices

Upstream repositoryBeta

Checks run against github.com/rikenbit/ahpubmeddbs on 2026-10-11.

No development-tooling practices detected in the upstream repository.

How this is detected·Detection ruleset v3 (2026-09-26)

Topics

Maintainer
Koki Tsuyuzaki

Available on

CRANr2uBioconductorautoCRANCOPR

People

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("AHPubMedDbs")
Tsuyuzaki, K., Ishii, M., & Nikaido, I. (2026). AHPubMedDbs: SQLites, tibbles, and data.tables for AnnotationHub (Version 1.8.0) [Computer software]. https://bioconductor.org/packages/AHPubMedDbs

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for AHPubMedDbs version 1.8.0 [Data set]. HJJB, LLC. Data release v2026-10-17. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-17, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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