Packages

1,045 packages on Bioconductor tagged AnnotationData or Metabolomics or Homo_sapiens, most distinct IPs first

AnnotationData, Metabolomics and Homo_sapiens in Topics

Package	Maintainer	Category	Latest version	Distinct IPs a month	Needs
limma Linear Models for Microarray and Omics DataGordon Smyth	Gordon Smyth	software	10 Aug 2026	45,965	6
GenomeInfoDbData Species and taxonomy ID look up tables used by GenomeInfoDbBioconductor Maintainer	Bioconductor Maintainer	annotation	no date on record	36,797	0
GO.db A set of annotation maps describing the entire Gene OntologyBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	33,694	42
org.Hs.eg.db Genome wide annotation for HumanBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	29,813	42
org.Mm.eg.db Genome wide annotation for MouseBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	13,520	42
ensembldb Utilities to create and use Ensembl-based annotation databasesJohannes Rainer	Johannes Rainer	software	25 May 2026	11,000	80
reactome.db A set of annotation maps for reactomeWillem Ligtenberg	Willem Ligtenberg	annotation	no date on record	7,578	42
graphite GRAPH Interaction from pathway Topological EnvironmentGabriele Sales	Gabriele Sales	software	28 Apr 2026	7,012	48
TxDb.Hsapiens.UCSC.hg19.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	6,258	75
pathview a tool set for pathway based data integration and visualizationWeijun Luo	Weijun Luo	software	28 Apr 2026	5,706	50
mzR parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)Steffen Neumann	Steffen Neumann	software	28 Apr 2026	5,639	15
mixOmics Omics Data Integration ProjectDerek Lei	Derek Lei	software	28 Apr 2026	5,370	83
HDO.db A set of annotation maps describing the entire Human Disease OntologyErqiang Hu	Erqiang Hu	annotation	no date on record	5,277	42
MsCoreUtils Core Utils for Mass Spectrometry DataRforMassSpectrometry Package Maintainer	RforMassSpectrometry Package Maintainer	software	28 Apr 2026	5,024	13
BSgenome.Hsapiens.UCSC.hg38 Full genomic sequences for Homo sapiens (UCSC genome hg38)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,989	60
QFeatures Quantitative features for mass spectrometry dataLaurent Gatto	Laurent Gatto	software	28 Apr 2026	4,540	99
Spectra Spectra Infrastructure for Mass Spectrometry DataRforMassSpectrometry Package Maintainer	RforMassSpectrometry Package Maintainer	software	9 Jun 2026	4,465	30
hgu133plus2.db Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,227	43
MetaboCoreUtils Core Utils for Metabolomics DataJohannes Rainer	Johannes Rainer	software	30 Apr 2026	3,940	24
TxDb.Hsapiens.UCSC.hg38.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	3,919	75
xcms LC-MS and GC-MS Data AnalysisSteffen Neumann	Steffen Neumann	software	7 Jul 2026	3,537	143
EnsDb.Hsapiens.v86 Ensembl based annotation packageJohannes Rainer	Johannes Rainer	annotation	no date on record	3,389	81
org.Rn.eg.db Genome wide annotation for RatBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	3,202	42
interactiveDisplayBase Base package for enabling powerful shiny web displays of Bioconductor objects			no date on record	2,988
ropls PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics dataEtienne A. Thevenot	Etienne A. Thevenot	software	28 Apr 2026	2,969	97
IlluminaHumanMethylation450kanno.ilmn12.hg19 Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	2,852	144
BSgenome.Hsapiens.UCSC.hg19 Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	2,842	58
MsFeatures Functionality for Mass Spectrometry FeaturesJohannes Rainer	Johannes Rainer	software	28 Apr 2026	2,505	31
MsExperiment Infrastructure for Mass Spectrometry ExperimentsLaurent Gatto	Laurent Gatto	software	28 Apr 2026	2,287	112
TxDb.Mmusculus.UCSC.mm10.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	2,192	75