Packages
20 packages on Bioconductor tagged SingleCell or BiomedicalInformatics or DNAMethylation, most distinct IPs first
SingleCell, BiomedicalInformatics and DNAMethylation in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| limma Linear Models for Microarray and Omics DataGordon Smyth | Gordon Smyth | software | 10 Aug 2026 | 45,965 | 6 |
| edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen | Yunshun Chen | software | 19 Oct 2026 | 32,392 | 10 |
| Rsubread Mapping, quantification and variant analysis of sequencing dataWei Shi | Wei Shi | software | 28 Apr 2026 | 2,951 | 8 |
| methylumi Handle Illumina methylation dataSean Davis | Sean Davis | software | 16 Aug 2026 | 2,825 | 158 |
| lumi BeadArray Specific Methods for Illumina Methylation and Expression MicroarraysLei Huang | Lei Huang | software | 28 Apr 2026 | 2,454 | 165 |
| ChemmineR Cheminformatics Toolkit for RThomas Girke | Thomas Girke | software | 28 Apr 2026 | 1,854 | 65 |
| IlluminaHumanMethylation450kmanifest Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen | Kasper Daniel Hansen | annotation | no date on record | 1,773 | 144 |
| FDb.InfiniumMethylation.hg19 Annotation package for Illumina Infinium DNA methylation probesTim Triche, Jr. | Tim Triche, Jr. | annotation | no date on record | 1,483 | 77 |
| IlluminaHumanMethylationEPICmanifest Manifest for Illumina's EPIC methylation arraysKasper Daniel Hansen | Kasper Daniel Hansen | annotation | no date on record | 1,449 | 144 |
| MEDIPS DNA IP-seq data analysisLukas Chavez | Lukas Chavez | software | 28 Apr 2026 | 1,093 | 102 |
| TurboNorm A fast scatterplot smoother suitable for microarray normalizationMaarten van Iterson | Maarten van Iterson | software | 28 Apr 2026 | 1,006 | 18 |
| HELP Tools for HELP data analysisReid F. Thompson | Reid F. Thompson | software | 28 Apr 2026 | 932 | 8 |
| MEDME Modelling Experimental Data from MeDIP EnrichmentMattia Pelizzola | Mattia Pelizzola | software | 28 Apr 2026 | 889 | 93 |
| les Identifying Differential Effects in Tiling Microarray DataJulian Gehring | Julian Gehring | software | 28 Apr 2026 | 881 | 13 |
| MassArray Analytical Tools for MassArray DataReid F. Thompson | Reid F. Thompson | software | 28 Apr 2026 | 684 | 5 |
| charm Analysis of DNA methylation data from CHARM microarrays | no date on record | 355 | |||
| methVisual Methods for visualization and statistics on DNA methylation data | no date on record | 317 | |||
| IlluminaHumanMethylation27k.db Illumina Illumina Human Methylation 27k annotation data (chip IlluminaHumanMethylation27k)Tim Triche, Jr. | Tim Triche, Jr. | annotation | no date on record | 276 | 43 |
| FDb.InfiniumMethylation.hg18 Annotation package for Illumina Infinium DNA methylation probesTim Triche, Jr. | Tim Triche, Jr. | annotation | no date on record | 232 | 77 |
| IlluminaHumanMethylation27kmanifest Annotation for Illumina's 27k methylation arraysKasper Daniel Hansen | Kasper Daniel Hansen | annotation | no date on record | 191 | 144 |