Packages
22 packages on Bioconductor tagged SingleCell or Classification or RNASeq, most distinct IPs first
SingleCell, Classification and RNASeq in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| limma Linear Models for Microarray and Omics DataGordon Smyth | Gordon Smyth | software | 10 Aug 2026 | 45,965 | 6 |
| edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen | Yunshun Chen | software | 19 Oct 2026 | 32,392 | 10 |
| MLInterfaces Uniform interfaces to R machine learning procedures for data in Bioconductor containersVincent Carey | Vincent Carey | software | 28 Apr 2026 | 1,628 | 120 |
| made4 Multivariate analysis of microarray data using ADE4Aedin Culhane | Aedin Culhane | software | 28 Apr 2026 | 1,279 | 38 |
| gpls Classification using generalized partial least squaresBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 1,045 | 1 |
| CMA Synthesis of microarray-based classificationRoman Hornung | Roman Hornung | software | 28 Apr 2026 | 1,039 | 7 |
| bioDist Different distance measuresBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 1,000 | 8 |
| vbmp Variational Bayesian Multinomial Probit RegressionNicola Lama | Nicola Lama | software | 28 Apr 2026 | 984 | 0 |
| ctc Cluster and Tree Conversion.Antoine Lucas | Antoine Lucas | software | 28 Apr 2026 | 979 | 1 |
| gaga GaGa hierarchical model for high-throughput data analysisDavid Rossell | David Rossell | software | 28 Apr 2026 | 959 | 17 |
| MiPP Misclassification Penalized Posterior ClassificationSukwoo Kim | Sukwoo Kim | software | 28 Apr 2026 | 895 | 12 |
| logicFS Identification of SNP InteractionsHolger Schwender | Holger Schwender | software | 28 Apr 2026 | 878 | 12 |
| Rmagpie MicroArray Gene-expression-based Program In Error rate estimationCamille Maumet | Camille Maumet | software | 28 Apr 2026 | 855 | 19 |
| iterativeBMA The Iterative Bayesian Model Averaging (BMA) algorithmKa Yee Yeung | Ka Yee Yeung | software | 28 Apr 2026 | 781 | 22 |
| RBioinf RBioinf | no date on record | 662 | |||
| maigesPack Functions to handle cDNA microarray data, including several methods of data analysis | no date on record | 618 | |||
| rHVDM Hidden Variable Dynamic Modeling | no date on record | 478 | |||
| SSPA General Sample Size and Power Analysis for Microarray and Next-Generation Sequencing Data | no date on record | 461 | |||
| dualKS Dual KS Discriminant Analysis and Classification | no date on record | 399 | |||
| pdmclass Classification of Microarray Samples using Penalized Discriminant Methods | no date on record | 348 | |||
| bgafun BGAfun A method to identify specifity determining residues in protein families | no date on record | 343 | |||
| MCRestimate Misclassification error estimation with cross-validation | no date on record | 317 |