Packages

185 packages on Bioconductor tagged Normalization or ChipDb or MassSpectrometry, most distinct IPs first

Normalization, ChipDb and MassSpectrometry in Topics

Package	Maintainer	Category	Latest version	Distinct IPs a month	Needs
limma Linear Models for Microarray and Omics DataGordon Smyth	Gordon Smyth	software	10 Aug 2026	45,965	6
hgu133plus2.db Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,227	43
xcms LC-MS and GC-MS Data AnalysisSteffen Neumann	Steffen Neumann	software	7 Jul 2026	3,537	143
MassSpecWavelet Peak Detection for Mass Spectrometry data using wavelet-based algorithmsSergio Oller Moreno	Sergio Oller Moreno	software	7 Jul 2026	3,096	0
hgu133a.db Affymetrix Affymetrix HG-U133A Array annotation data (chip hgu133a)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,996	43
hgu95av2.db Affymetrix Affymetrix HG_U95Av2 Array annotation data (chip hgu95av2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,605	43
hugene10sttranscriptcluster.db Affymetrix hugene10 annotation data (chip hugene10sttranscriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	1,302	43
ACME Algorithms for Calculating Microarray Enrichment (ACME)Sean Davis	Sean Davis	software	28 Apr 2026	1,278	7
illuminaHumanv4.db Illumina HumanHT12v4 annotation data (chip illuminaHumanv4)Mark Dunning	Mark Dunning	annotation	no date on record	1,274	43
affylmGUI GUI for limma Package with Affymetrix MicroarraysGordon Smyth	Gordon Smyth	software	28 Apr 2026	1,194	55
limmaGUI GUI for limma Package With Two Color MicroarraysGordon Smyth	Gordon Smyth	software	28 Apr 2026	1,165	11
mouse4302.db Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,058	43
plgem Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)Norman Pavelka	Norman Pavelka	software	28 Apr 2026	1,047	9
apComplex Estimate protein complex membership using AP-MS protein dataDenise Scholtens	Denise Scholtens	software	28 Apr 2026	1,009	48
PROcess Ciphergen SELDI-TOF ProcessingXiaochun Li	Xiaochun Li	software	28 Apr 2026	893	11
hgu219.db Affymetrix Human Genome 219 Plate annotation data (chip hgu219)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	879	43
MANOR CGH Micro-Array NORmalizationPierre Neuvial	Pierre Neuvial	software	28 Apr 2026	855	9
hgu95a.db Affymetrix Affymetrix HG_U95A Array annotation data (chip hgu95a)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	809	43
illuminaHumanv3.db Illumina HumanHT12v3 annotation data (chip illuminaHumanv3)Mark Dunning	Mark Dunning	annotation	no date on record	753	43
hgu133a2.db Affymetrix Affymetrix HG-U133A_2 Array annotation data (chip hgu133a2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	687	43
hu6800.db Affymetrix Affymetrix Hu6800 Array annotation data (chip hu6800)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	666	43
hugene20sttranscriptcluster.db Affymetrix hugene20 annotation data (chip hugene20sttranscriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	652	43
rae230a.db Affymetrix Affymetrix RAE230A Array annotation data (chip rae230a)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	598	43
hta20transcriptcluster.db Affymetrix hta20 annotation data (chip hta20transcriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	568	43
illuminaHumanv2.db Illumina HumanWG6v2 annotation data (chip illuminaHumanv2)Mark Dunning	Mark Dunning	annotation	no date on record	518	43
lumiHumanAll.db Illumina Human Illumina expression annotation data (chip lumiHumanAll)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	481	43
hgu133b.db Affymetrix Affymetrix HG-U133B Array annotation data (chip hgu133b)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	451	43
hugene11sttranscriptcluster.db Affymetrix hugene11 annotation data (chip hugene11sttranscriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	444	43
rat2302.db Affymetrix Affymetrix Rat230_2 Array annotation data (chip rat2302)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	441	43
illuminaMousev2.db Illumina MouseWG6v2 annotation data (chip illuminaMousev2)Mark Dunning	Mark Dunning	annotation	no date on record	439	43