Packages
229 packages on Bioconductor tagged SingleCell or Genetics or ExperimentData, most distinct IPs first
SingleCell, Genetics and ExperimentData in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| Biostrings Efficient manipulation of biological stringsHervé Pagès | Hervé Pagès | software | 2 Sep 2026 | 58,962 | 14 |
| limma Linear Models for Microarray and Omics DataGordon Smyth | Gordon Smyth | software | 10 Aug 2026 | 45,965 | 6 |
| TxDb.Hsapiens.UCSC.hg19.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 6,258 | 75 |
| BSgenome.Hsapiens.UCSC.hg38 Full genomic sequences for Homo sapiens (UCSC genome hg38)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 4,989 | 60 |
| TxDb.Hsapiens.UCSC.hg38.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 3,919 | 75 |
| BSgenome.Hsapiens.UCSC.hg19 Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,842 | 58 |
| TxDb.Mmusculus.UCSC.mm10.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,192 | 75 |
| BSgenome.Mmusculus.UCSC.mm10 Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,152 | 58 |
| aCGH Classes and functions for Array Comparative Genomic Hybridization dataPeter Dimitrov | Peter Dimitrov | software | 28 Apr 2026 | 1,323 | 17 |
| msdata Various Mass Spectrometry raw data example filesSteffen Neumann | Steffen Neumann | experiment | 5 May 2026 | 1,252 | 0 |
| TxDb.Dmelanogaster.UCSC.dm3.ensGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 1,161 | 75 |
| BSgenome.Hsapiens.NCBI.GRCh38 Full genome sequences for Homo sapiens (GRCh38)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 1,017 | 58 |
| BSgenome.Celegans.UCSC.ce2 Full genome sequences for Caenorhabditis elegans (UCSC version ce2)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 1,010 | 58 |
| Homo.sapiens Annotation package for the Homo.sapiens objectBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 1,006 | 82 |
| TxDb.Mmusculus.UCSC.mm9.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 893 | 75 |
| BSgenome.Hsapiens.UCSC.hg18 Full genome sequences for Homo sapiens (UCSC version hg18)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 888 | 58 |
| logicFS Identification of SNP InteractionsHolger Schwender | Holger Schwender | software | 28 Apr 2026 | 878 | 12 |
| BSgenome.Dmelanogaster.UCSC.dm3 Full genome sequences for Drosophila melanogaster (UCSC version dm3)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 870 | 58 |
| BSgenome.Scerevisiae.UCSC.sacCer2 Saccharomyces cerevisiae (Yeast) full genome (UCSC version sacCer2)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 850 | 58 |
| TxDb.Hsapiens.UCSC.hg18.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 838 | 75 |
| ChAMPdata Data Packages for ChAMP packageYuan Tian | Yuan Tian | experiment | 5 May 2026 | 816 | 11 |
| TxDb.Athaliana.BioMart.plantsmart22 Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 746 | 75 |
| BSgenome.Mmusculus.UCSC.mm39 Full genome sequences for Mus musculus (UCSC genome mm39, based on GRCm39)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 669 | 58 |
| SNPlocs.Hsapiens.dbSNP144.GRCh38 SNP locations for Homo sapiens (dbSNP Build 144)H. Pagès | H. Pagès | annotation | no date on record | 644 | 60 |
| TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 577 | 75 |
| FDb.UCSC.tRNAs Annotation package for FeatureDb object(s)Biocore Data Team | Biocore Data Team | annotation | no date on record | 575 | 75 |
| TxDb.Celegans.UCSC.ce11.ensGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 572 | 75 |
| RforProteomics Companion package to the 'Using R and Bioconductor for proteomics data analysis' publicationLaurent Gatto | Laurent Gatto | experiment | 5 May 2026 | 566 | 144 |
| PolyPhen.Hsapiens.dbSNP131 PolyPhen Predictions for Homo sapiens dbSNP build 131Valerie Obenchain | Valerie Obenchain | annotation | no date on record | 560 | 77 |
| FlowSorted.Blood.450k Illumina HumanMethylation data on sorted blood cell populationsAndrew E Jaffe | Andrew E Jaffe | experiment | 5 May 2026 | 558 | 144 |