R Observatory
Menu
Search

Packages

Downloads

Distinct IPs a month

Licence

Licence family offered

Topic: DimensionReduction or AnnotationData or ChIPSeq

biocViews term

Category

People
AI tools

AI coding tool

AI tool found as

Model named in commits

Code

Source repository on GitHub known

Dates
First letter: M

First letter

Release

In the current release or not

Bioconductor release

Clear all

132 packages on Bioconductor tagged DimensionReduction or AnnotationData or ChIPSeq, most distinct IPs first

DimensionReduction, AnnotationData and ChIPSeq in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
MOFA2
Multi-Omics Factor Analysis v2Ricard Argelaguet		Ricard Argelaguetsoftware6 Sep 20261,96785
motifStack
Plot stacked logos for single or multiple DNA, RNA and amino acid sequenceJianhong Ou		Jianhong Ousoftware28 Apr 20261,782111
made4
Multivariate analysis of microarray data using ADE4Aedin Culhane		Aedin Culhanesoftware28 Apr 20261,27938
matter
Out-of-core statistical computing and signal processingKylie A. Bemis		Kylie A. Bemissoftware28 Apr 20261,16824
MEDIPS
DNA IP-seq data analysisLukas Chavez		Lukas Chavezsoftware28 Apr 20261,093102
mouse4302.db
Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record1,05843
meshr
Tools for conducting enrichment analysis of MeSHKoki Tsuyuzaki		Koki Tsuyuzakisoftware28 Apr 20261,04882
M3Drop
Michaelis-Menten Modelling of Dropouts in single-cell RNASeqTallulah Andrews		Tallulah Andrewssoftware28 Apr 20261,017153
MMDiff2
Statistical Testing for ChIP-Seq data setsGabriele Schweikert		Gabriele Schweikertsoftware28 Apr 202698296
MeSHDbi
DBI to construct MeSH-related package from sqlite fileKoki Tsuyuzaki		Koki Tsuyuzakisoftware28 Apr 202697542
metagene2
A package to produce metagene plotsEric Fournier		Eric Fourniersoftware28 Apr 202694888
mouse4302cdf
mouse4302cdfBioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record94442
metaseqR2
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithmsPanagiotis Moulos		Panagiotis Moulossoftware28 Apr 2026925237
MIRA
Methylation-Based Inference of Regulatory ActivityJohn Lawson		John Lawsonsoftware28 Apr 202689496
motifbreakR
A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding SitesSimon Gert Coetzee		Simon Gert Coetzeesoftware7 Oct 2026876178
MatrixQCvis
Shiny-based interactive data-quality exploration for omics dataThomas Naake		Thomas Naakesoftware17 Aug 2026786188
missRows
Handling Missing Individuals in Multi-Omics Data IntegrationGonzalez Ignacio		Gonzalez Ignaciosoftware28 Apr 202671058
Motif2Site
Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditionsPeyman Zarrineh		Peyman Zarrinehsoftware28 Apr 2026704124
marr
Maximum rank reproducibilityTusharkanti Ghosh		Tusharkanti Ghoshsoftware28 Apr 202669750
MACSr
MACS: Model-based Analysis for ChIP-SeqQiang Hu		Qiang Husoftware28 Apr 202664675
motifTestR
Perform key tests for binding motifs in sequence dataStevie Pederson		Stevie Pedersonsoftware2 Jul 202657845
MOSClip
Multi Omics Survival ClipPaolo Martini		Paolo Martinisoftware28 Apr 2026544222
mouse4302probe
Probe sequence data for microarrays of type mouse4302Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record47242
mogene10sttranscriptcluster.db
Affymetrix mogene10 annotation data (chip mogene10sttranscriptcluster)Biocore Package Maintainer		Biocore Package Maintainerannotationno date on record42243
Mus.musculus
Annotation package for the Mus.musculus objectBioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record41682
MotifPeeker
Benchmarking Epigenomic Profiling Methods Using Motif EnrichmentHiranyamaya Dash		Hiranyamaya Dashsoftware28 Apr 2026410180
medicagoprobe
Probe sequence data for microarrays of type medicagoBioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record38742
miRNAtap.db
Data for miRNAtapMaciej Pajak		Maciej Pajakannotationno date on record38252
mouse430a2.db
Affymetrix Affymetrix Mouse430A_2 Array annotation data (chip mouse430a2)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record37643
moe430a.db
Affymetrix Affymetrix MOE430A Array annotation data (chip moe430a)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record36743