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Topic: BSgenome or Alignment

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10 packages on Bioconductor tagged BSgenome or Alignment, most distinct IPs first

BSgenome and Alignment in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
msa
Multiple Sequence AlignmentUlrich Bodenhofer		Ulrich Bodenhofersoftware12 Aug 20262,97216
motifStack
Plot stacked logos for single or multiple DNA, RNA and amino acid sequenceJianhong Ou		Jianhong Ousoftware28 Apr 20261,782111
muscle
Multiple Sequence Alignment with MUSCLEAlex T. Kalinka		Alex T. Kalinkasoftware28 Apr 20261,06615
metagene2
A package to produce metagene plotsEric Fournier		Eric Fourniersoftware28 Apr 202694888
MethTargetedNGS
Perform Methylation Analysis on Next Generation Sequencing DataMuhammad Ahmer Jamil		Muhammad Ahmer Jamilsoftware28 Apr 202669940
MSA2dist
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysisKristian K Ullrich		Kristian K Ullrichsoftware28 Apr 202667955
mitoClone2
Clonal Population Identification in Single-Cell RNA-Seq Data using Mitochondrial and Somatic MutationsBenjamin Story		Benjamin Storysoftware28 Apr 202667497
mobileRNA
mobileRNA: Investigate the RNA mobilome & population-scale changesKatie Jeynes-Cupper		Katie Jeynes-Cuppersoftware28 Apr 2026546149
MotifPeeker
Benchmarking Epigenomic Profiling Methods Using Motif EnrichmentHiranyamaya Dash		Hiranyamaya Dashsoftware28 Apr 2026410180
metabom8
A High-Performance R Package for Metabolomics Modeling and AnalysisTorben Kimhofer		Torben Kimhofersoftware13 May 202638792