Description
Logging of scripts suitable for clinical trials using 'Quarto' to create nice human readable logs. 'whirl' enables execution of scripts in batch, while simultaneously creating logs for the execution of each script, and providing an overview summary log of the entire batch execution.
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| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | ERROR |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (1 non-OK)
ERROR
r-oldrel-windows-x86_64
tests
Running 'testthat.R' [408s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(whirl)
>
> test_check("whirl")
Saving _problems/test-mdformats-35.R
[ FAIL 1 | WARN 0 | SKIP 16 | PASS 150 ]
══ Skipped tests (16) ══════════════════════════════════════════════════════════
• On CRAN (16): 'test-biocompute.R:1:1', 'test-custom_logging.R:19:1',
'test-examples.R:2:3', 'test-python.R:2:3', 'test-python.R:44:3',
'test-run.R:33:3', 'test-run.R:76:3', 'test-run.R:87:3', 'test-run.R:95:3',
'test-run.R:112:3', 'test-run.R:134:3', 'test-run.R:151:3',
'test-run.R:161:3', 'test-strace.R:42:3', 'test-util_queue_summary.R:11:3',
'test-whirl_queue.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-mdformats.R:29:3'): pandoc works ─────────────────────────────
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
[ FAIL 1 | WARN 0 | SKIP 16 | PASS 150 ]
Error:
! Test failures.
Execution halted
Check History
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 10, 2026
ERROR
r-oldrel-windows-x86_64
tests
Running 'testthat.R' [412s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional tes ...[truncated]... st-mdformats.R:29:3'): pandoc works ───────────────────────────── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE [ FAIL 1 | WARN 0 | SKIP 16 | PASS 150 ] Error: ! Test failures. Execution halted