wTO
Computing Weighted Topological Overlaps (wTO) & Consensus wTO Network
Description
Computes the Weighted Topological Overlap with positive and negative signs (wTO) networks given a data frame containing the mRNA count/ expression/ abundance per sample, and a vector containing the interested nodes of interaction (a subset of the elements of the full data frame). It also computes the cut-off threshold or p-value based on the individuals bootstrap or the values reshuffle per individual. It also allows the construction of a consensus network, based on multiple wTO networks. The package includes a visualization tool for the networks. More about the methodology can be found at <doi:10.1186/s12859-018-2351-7>.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘Deisy Morselli Gysi <deisy.ccnr@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Deisy", "Morselli"),
family = "Gysi",
role = c("aut", "cre"),
email = "deisy.ccnr@gmail.com"),
person(given = "Andre",
family = "Voigt",
role = "aut"),
person(given = c("Tiago", "Miranda"),
family = "Fragoso",
role = "aut"),
person(given = "Eivind",
family = "Almaas",
role = "aut"),
person(given = "Katja",
family = "Nowick.",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Deisy Morselli Gysi <deisy.ccnr@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Deisy", "Morselli"),
family = "Gysi",
role = c("aut", "cre"),
email = "deisy.ccnr@gmail.com"),
person(given = "Andre",
family = "Voigt",
role = "aut"),
person(given = c("Tiago", "Miranda"),
family = "Fragoso",
role = "aut"),
person(given = "Eivind",
family = "Almaas",
role = "aut"),
person(given = "Katja",
family = "Nowick.",
role = "aut"))
as necessary.
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Deisy Morselli Gysi <deisy.ccnr@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Deisy", "Morselli"),
family = "Gysi",
role = c("aut",
...[truncated]...
person(given = "Eivind",
family = "Almaas",
role = "aut"),
person(given = "Katja",
family = "Nowick.",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Deisy Morselli Gysi <deisy.ccnr@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Deisy", "Morselli"),
family = "Gysi",
role = c("aut",
...[truncated]...
person(given = "Eivind",
family = "Almaas",
role = "aut"),
person(given = "Katja",
family = "Nowick.",
role = "aut"))
as necessary.