vsmi | R Observatory

Overview

About

Maintained by Haoyu YangFirst published 2024-05-251 releasesCRAN page ↗

Penalized weighted least-squares estimate for variable selection on correlated multiply imputed data and penalized estimating equations for generalized linear models with multiple imputation. Reference: Li, Y., Yang, H., Yu, H., Huang, H., Shen, Y*. (2023) "Penalized estimating equations for generalized linear models with multiple imputation", doi:10.1214/22-AOAS1721. Li, Y., Yang, H., Yu, H., Huang, H., Shen, Y*. (2023) "Penalized weighted least-squares estimate for variable selection on correlated multiply imputed data", doi:10.1093/jrsssc/qlad028.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("vsmi", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-vsmi

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-vsmi

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-vsmi

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.6 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

None

Vignettes

README

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-02
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-25
11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Downloads

1.8K

CRAN downloads in the past year

Rank #21,852 · ~5/day · ~151/mo

Daily download trend is not available in this view yet.

21730 days

54690 days

1.8K1 year

Compare downloads with other packages →

Also on94 r2u4 autocran

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (4)

MASSMatrixmice qif

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 1,526 (89%)Rd 191 (11%)

Code characteristics

Cyclomatic complexity: 34.5 median / 58 max
Documented parameters: 92%

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

4 4 exported

Complexity

35.8 avg / 58 max

Call network

4 nodes / 0 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (3)

Maintainer (1)

Haoyu Yang

Author, Maintainer

Authors (3)

Haoyu Yang

Author, Maintainer

Yang Li

Author

Mingyue Zhang

Author

Release timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2024-05-25
Total releases: 1 / 2 yrs
License: MIT + file LICENSE OSI
Download size: 9.8 KB
Installed size: not tracked yet
With dependencies: not tracked yet