treesliceR
To Slice Phylogenetic Trees and Infer Evolutionary Patterns Over Time
Description
Provide a range of functions with multiple criteria for cutting phylogenetic trees at any evolutionary depth. It enables users to cut trees in any orientation, such as rootwardly (from root to tips) and tipwardly (from tips to its root), or allows users to define a specific time interval of interest. It can also be used to create multiple tree pieces of equal temporal width. Moreover, it allows the assessment of novel temporal rates for various phylogenetic indexes, which can be quickly displayed graphically.
Downloads
252
Last 30 days
16869th
621
Last 90 days
2.5K
Last year
Trend: +43.2% (30d vs prior 30d)
9
Last 30 days
32
Last 90 days
164
Last year
Trend: -60.9% (30d vs prior 30d)
5
Last 7 days
15
Last 30 days
1
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
re-building of vignette outputs
Error(s) in re-building vignettes: ... --- re-building ‘Intro-treesliceR.Rmd’ using rmarkdown --- finished re-building ‘Intro-treesliceR.Rmd’ --- re-building ‘Passeriformes-distribution.Rmd’ using rmarkdown Quitting from Passeriformes-distributio ...[truncated]... e called 'ggpubr' --- failed re-building ‘Passeriformes-diversification.Rmd’ SUMMARY: processing the following files failed: ‘Passeriformes-distribution.Rmd’ ‘Passeriformes-diversification.Rmd’ Error: Vignette re-building failed. Execution halted
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 6, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 5, 2026
tests
Running ‘testthat.R’ [102s/113s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additiona ...[truncated]... [i]], from = from[[i]], to = to[[i]]) at test-squeeze_int.R:37:5 2. └─treesliceR::squeeze_root(tree, from, criterion = criterion, dropNodes = dropNodes) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1311 ] Error: ! Test failures. Execution halted