toxpiR

1.3.2

Create ToxPi Prioritization Models

0packages depend

4.3Kdownloads / year

–test coverage

12/13checks pass

Overview

About

Maintained by Jonathon F FlemingFirst published 2022-02-076 releasesCRAN page ↗GitHub ↗

Enables users to build 'ToxPi' prioritization models and provides functionality within the grid framework for plotting ToxPi graphs. 'toxpiR' allows for more customization than the 'ToxPi GUI' (https://toxpi.github.io/) and integration into existing workflows for greater ease-of-use, reproducibility, and transparency. toxpiR package behaves nearly identically to the GUI; the package documentation includes notes about all differences. The vignettes download example files from https://github.com/ToxPi/ToxPi-example-files.

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("toxpiR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ToxPi/toxpiR")

Development version from ToxPi/toxpiR. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-toxpir

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

1NOTE12OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 7.2 min · r-devel-linux-x86_64-fedora-gcc

Code health

Yes

Tests · ratio 0.68

not tracked

Coverage

100%

Documentation · exports

Yes

Vignettes

README

Dependencies · direct

Check history

NOTE2026-07-11
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-05-06
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-04-23
10 OK · 3 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Downloads

4.3K

CRAN downloads in the past year

Rank #7,427 · ~12/day · ~360/mo

Releases R versions

Daily download trend is not available in this view yet.

51430 days

1.5K90 days

4.3K1 year

Compare downloads with other packages →

Also on195 r2u

Repository

GitHub ↗ toxpi/toxpir

11Stars

5Forks

7Open issues

0Open PRs

3Releases

67Commits

7Contributors

rr-packagedata-sciencemodelingtoxicology

License GPL-3.0 · 67 commits · Last activity 2026-06-15

Stars over time

2024-11-11 · 112026-07-07 · 11

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0

Imports (10)

grDevicesmethodsS4VectorsgridrlangstatsBiocGenerics tidyrutilsggplot2

LinkingTo (0)

none

Suggests (5)

rmarkdown knitr testthat covr DBI

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 4,247 (55%)Rd 1,470 (19%)Other 1,166 (15%)Vignettes 857 (11%)

Code characteristics

Object systems

S31S4 class10S4 generic17S4 method47

Cyclomatic complexity: 1.0 median / 15 max
Test cases: 43 / 0.68 per code line
Documented parameters: 92%

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

93 17 exported

Complexity

2.7 avg / 15 max

Call network

93 nodes / 69 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (7)

Maintainer (1)

Jonathon F Fleming

Author, Maintainer · added in 1.3.0

Authors (6)

Jonathon F Fleming

Author, Maintainer · added in 1.3.0

Author, Funder

Author

Author

Author, Funder

Author

Funders (3)

Dayne L Filer

Author, Funder

David M Reif

Author, Funder

Alison A Motsinger-Reif

Funder · added in 1.0.3

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

1.3.2Latest
2026-05-01 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
1.3.1
2025-12-16 · diff ↗
R
R 4.5.0 released · 2025-04-11
1.3.0
2024-09-12 · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.2.1
2022-07-20 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.0.3
2022-02-18 · diff ↗
1.0.2
2022-02-07
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-02-07
Total releases: 6 / 4 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 4.0
Bundled data: 1.1 KB / 2 files
Download size: 9.3 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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