thgenetics

0.4-2

Genetic Rare Variants Tests

0packages depend

1.9Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Thomas HoffmannFirst published 2010-09-237 releasesCRAN page ↗

A step-up test for genetic rare variants in a gene or in a pathway. The method determines an optimal grouping of rare variants analytically. The method has been described in Hoffmann TJ, Marini NJ, and Witte JS (2010) doi:10.1371/journal.pone.0013584.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("thgenetics")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# one-time r2u setup for Ubuntu (noble)

curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash

# then install

sudo apt install r-cran-thgenetics

Fast Ubuntu binaries via r2u (no compilation). Run the setup once per machine.

bspm (used by r2u) also needs make: sudo apt install make

sudo dnf copr enable iucar/cran

sudo dnf install R-CRAN-thgenetics

RPMs from the iucar/cran COPR, rebuilt from CRAN.

sudo zypper install R-thgenetics

RPMs auto-built from CRAN on openSUSE OBS.

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

None

Vignettes

README

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Downloads

1.9K

CRAN downloads in the past year

Rank #23,292 · ~5/day · ~158/mo

thgenetics Releases R versions

Daily download trend is not available in this view yet.

20430 days

47990 days

1.9K1 year

Compare downloads with other packages →

Also on412 r2u7 autocran

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Code Composition

C++ 752 (72%)R 122 (12%)Rd 99 (9%)C 76 (7%)

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

27 2 exported

Complexity

4.6 avg / 7 max

Call network

27 nodes / 21 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

Open call graph →

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (0)

Author records are not tracked yet for this package.

Release timeline

7 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
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R 4.4.0 released · 2024-04-24
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R 4.3.0 released · 2023-04-21
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R 4.2.0 released · 2022-04-22
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R 4.1.0 released · 2021-05-18
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R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
0.4-2Latest
2018-04-18 · current release · diff ↗
0.4-0
2018-04-10 · diff ↗
R
R 3.4.0 released · 2017-04-21
0.3-4.1
2016-07-10 · diff ↗
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10

Show 10 earlier events

R
R 3.0.0 released · 2013-04-03
0.3-4
2013-03-30 · diff ↗
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
0.3-2
2011-09-28 · diff ↗
R
R 2.13.0 released · 2011-04-13
0.3-1
2011-01-14 · diff ↗
R
R 2.12.0 released · 2010-10-15
0.3-0
2010-09-23
R
R 2.11.0 released · 2010-04-22

Package metadata

First published: 2010-09-23
Total releases: 7 / 16 yrs
License: GPL
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet