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taxonomizr

Functions to Work with NCBI Accessions and Taxonomy

v0.11.1 · Mar 13, 2025 · GPL (>= 2) | file LICENSE
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Description

Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to download NCBI data dumps and create a local database for fast and local taxonomic assignment.

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CRAN Check Status

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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Additional Issues

linux-arm64 Details →

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Reverse Dependencies (1)

imports

DBTC

Dependency Network

Dependencies Reverse dependencies RSQLite R.utils data.table curl DBTC taxonomizr

Version History

new 0.11.1 Mar 10, 2026
updated 0.11.1 ← 0.10.8 diff Mar 12, 2025
updated 0.10.8 ← 0.10.7 diff Feb 27, 2025
updated 0.10.7 ← 0.10.6 diff Jan 7, 2025
updated 0.10.6 ← 0.10.2 diff Dec 14, 2023
updated 0.10.2 ← 0.9.3 diff Jan 30, 2023
updated 0.9.3 ← 0.9.2 diff Jun 25, 2022
updated 0.9.2 ← 0.8.0 diff Jun 22, 2022
updated 0.8.0 ← 0.7.1 diff May 6, 2021
updated 0.7.1 ← 0.6.0 diff Apr 22, 2021
updated 0.6.0 ← 0.5.3 diff Feb 8, 2021
updated 0.5.3 ← 0.5.1 diff Apr 21, 2019
updated 0.5.1 ← 0.2.2 diff Aug 30, 2018
new 0.2.2 Mar 8, 2017