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smidm

Statistical Modelling for Infectious Disease Management

v1.0 · Aug 27, 2022 · BSD_3_clause + file LICENSE

Description

Statistical models for specific coronavirus disease 2019 use cases at German local health authorities. All models of Statistical modelling for infectious disease management 'smidm' are part of the decision support toolkit in the 'EsteR' project. More information is published in Sonja Jäckle, Rieke Alpers, Lisa Kühne, Jakob Schumacher, Benjamin Geisler, Max Westphal "'EsteR' – A Digital Toolkit for COVID-19 Decision Support in Local Health Authorities" (2022) <doi:10.3233/SHTI220799> and Sonja Jäckle, Elias Röger, Volker Dicken, Benjamin Geisler, Jakob Schumacher, Max Westphal "A Statistical Model to Assess Risk for Supporting COVID-19 Quarantine Decisions" (2021) <doi:10.3390/ijerph18179166>.

Downloads

CRAN

632

Last 30 days

5453rd

2K

Last 90 days

8.2K

Last year

Trend: -4.7% (30d vs prior 30d)

r2u CRAN

0

Last 30 days

24

Last 90 days

94

Last year

Trend: -100% (30d vs prior 30d)

autoCRAN

2

Last 7 days

22

Last 30 days

0

All-time

autoCRAN-only: this name is served only by autoCRAN, so the count is exact.

CRAN Check Status

13 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
NOTE 12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 8, 2026
NOTE r-devel-linux-x86_64-debian-gcc

relative paths in package URLs

Checking relative paths failed with message:
  inferior call failed
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Code intelligence has not been computed for this package yet.

Code

Structure

Lines of code

3,503

Files

67

Compiled share

0%

Has compiled src

No

Language breakdown

R 1,022 (29.2%)Tests 758 (21.6%)Docs 586 (16.7%)Vignettes 1,137 (32.5%)

API

Exported functions

11

Internal functions

35

Recent export changes

v1.0+11 calculate_likelihood_negative_tests, calculate_posterior_no_infections, calculate_prior_infections +8 more

Testing & CI

Has tests

Yes

Test-to-code ratio

0.74

testthat edition

3

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

100%

\dontrun example ratio

0%

Roxygen coverage

100%

Has pkgdown

No

NEWS present

No

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

System requirements

C++ standard

License

BSD_3_clause + file LICENSE

License flags

SPDX valid, OSI approved

History

Versions

1

First release

2022-08-27

Latest release

2022-08-27

Avg cadence

Cold removal rate

Dep drift

0

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Dependency Network

Dependencies Reverse dependencies dplyr extraDistr smidm

Version History

1 tracked
new 1.0 Mar 10, 2026

R Observatory began tracking this package on Mar 10, 2026; it first appeared on CRAN Aug 27, 2022. Releases before tracking aren’t shown.