Skip to content

simode

Statistical Inference for Systems of Ordinary Differential Equations using Separable Integral-Matching

v1.2.2 · Feb 16, 2024 · GPL (>= 2)

Description

Implements statistical inference for systems of ordinary differential equations, that uses the integral-matching criterion and takes advantage of the separability of parameters, in order to obtain initial parameter estimates for nonlinear least squares optimization. Dattner & Yaari (2018) <arXiv:1807.04202>. Dattner et al. (2017) <doi:10.1098/rsif.2016.0525>. Dattner & Klaassen (2015) <doi:10.1214/15-EJS1053>.

Downloads

218

Last 30 days

21034th

597

Last 90 days

2.6K

Last year

Trend: +0.9% (30d vs prior 30d)

CRAN Check Status

4 NOTE
10 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang NOTE
r-devel-linux-x86_64-fedora-gcc NOTE
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (4 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Rami Yaari <ramiyaari@gmail.com>’

The Description field contains
  & Yaari (2018) <arXiv:1807.04202>.  Dattner et al. (2017)
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Rami Yaari <ramiyaari@gmail.com>’

The Description field contains
  & Yaari (2018) <arXiv:1807.04202>.  Dattner et al. (2017)
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespace in Imports field not imported from: ‘quadprog’
  All declared Imports should be used.
NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespace in Imports field not imported from: ‘quadprog’
  All declared Imports should be used.

Additional Issues

donttest Details →

Check History

NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Rami Yaari <ramiyaari@gmail.com>’

The Description field contains
  & Yaari (2018) <arXiv:1807.04202>.  Dattner et al. (2017)
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Rami Yaari <ramiyaari@gmail.com>’

The Description field contains
  & Yaari (2018) <arXiv:1807.04202>.  Dattner et al. (2017)
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespace in Imports field not imported from: ‘quadprog’
  All declared Imports should be used.
NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespace in Imports field not imported from: ‘quadprog’
  All declared Imports should be used.

Dependency Network

Dependencies Reverse dependencies deSolve pracma quadprog glmnet ncvreg simode

Version History

new 1.2.2 Mar 10, 2026
updated 1.2.2 ← 1.2.0 diff Feb 15, 2024
updated 1.1.9 ← 1.1.8 diff May 13, 2020
updated 1.2.0 ← 1.1.9 diff May 13, 2020
updated 1.1.8 ← 1.1.6 diff Nov 30, 2019
updated 1.1.6 ← 1.1.5 diff Sep 30, 2019
updated 1.1.5 ← 1.1.4 diff Sep 28, 2019
updated 1.1.4 ← 1.1.2 diff Apr 25, 2019
updated 1.1.2 ← 1.1.1 diff Jan 20, 2019
updated 1.1.1 ← 1.1.0 diff Oct 5, 2018
updated 1.1.0 ← 1.0.2 diff Oct 4, 2018
updated 1.0.2 ← 1.0.1 diff Aug 5, 2018
new 1.0.1 Aug 1, 2018