shiftR
Fast Enrichment Analysis via Circular Permutations
Description
Fast enrichment analysis for locally correlated statistics via circular permutations. The analysis can be performed at multiple significance thresholds for both primary and auxiliary data sets with efficient correction for multiple testing.
Downloads
240
Last 30 days
20721st
547
Last 90 days
2.2K
Last year
Trend: +103.4% (30d vs prior 30d)
24
Last 30 days
115
Last 90 days
400
Last year
Trend: -40% (30d vs prior 30d)
4
Last 7 days
8
Last 30 days
1
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-windows-x86_64 | NOTE |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | NOTE |
| r-release-linux-x86_64 | NOTE |
| r-release-macos-arm64 | NOTE |
| r-release-macos-x86_64 | NOTE |
| r-release-windows-x86_64 | NOTE |
Check details (13 non-OK)
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Check History
NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Rd files
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Code & tests
Open call graph →Code intelligence has not been computed for this package yet.
Code
Structure
Lines of code
1,584
Files
25
Compiled share
9.7%
Has compiled src
Yes
Language breakdown
API
Exported functions
14
Internal functions
9
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
100%
\dontrun example ratio
0%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
No
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
LGPL-3
License flags
SPDX valid, OSI approved
History
Versions
3
First release
2018-01-13
Latest release
2019-03-22
Avg cadence
217 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.