shiftR

Fast Enrichment Analysis via Circular Permutations

v1.5 · Mar 22, 2019 · LGPL-3

Description

Fast enrichment analysis for locally correlated statistics via circular permutations. The analysis can be performed at multiple significance thresholds for both primary and auxiliary data sets with efficient correction for multiple testing.

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CRAN Check Status

14 NOTE

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	37.3s
r-devel-linux-x86_64-debian-gcc	NOTE	29.9s
r-devel-linux-x86_64-fedora-clang	NOTE	57.5s
r-devel-linux-x86_64-fedora-gcc	NOTE	70.3s
r-devel-macos-arm64	NOTE	21s
r-devel-windows-x86_64	NOTE	68s
r-oldrel-macos-arm64	NOTE
r-oldrel-macos-x86_64	NOTE	49s
r-oldrel-windows-x86_64	NOTE	80s
r-patched-linux-x86_64	NOTE	35.2s
r-release-linux-x86_64	NOTE	33.1s
r-release-macos-arm64	NOTE
r-release-macos-x86_64	NOTE	58s
r-release-windows-x86_64	NOTE	67s

Check details (14 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-devel-linux-x86_64-debian-gcc

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-release-macos-arm64

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

Check History

NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-devel-linux-x86_64-debian-gcc

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-release-macos-arm64

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
    37 |     See code{\link{shiftrPermBinary}} function and the respective example.
       |             ^

Version History

new 1.5 Mar 10, 2026

updated 1.5 ← 1.4 diff Mar 21, 2019

updated 1.4 ← 1.2 diff Mar 2, 2018

new 1.2 Jan 12, 2018