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sequoia

Pedigree Inference from SNPs

v3.2.0 · Jan 9, 2026 · GPL-2

Description

Multi-generational pedigree inference from incomplete data on hundreds of SNPs, including parentage assignment and sibship clustering. See Huisman (2017) (<DOI:10.1111/1755-0998.12665>) for more information.

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CRAN Check Status

13 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
ERROR r-devel-linux-x86_64-debian-gcc

re-building of vignette outputs

Error(s) in re-building vignettes:
  ...
--- re-building ‘PedComp.Rmd’ using rmarkdown
--- finished re-building ‘PedComp.Rmd’

Fatal error: cannot create 'R_TempDir'
--- re-building ‘vignette-age.Rmd’ using rmarkdown
Warning in file(con, "w") :
  can
...[truncated]...
e_mtDNA.pdf.asis’ using asis
--- finished re-building ‘vignette_mtDNA.pdf.asis’

SUMMARY: processing the following files failed:
  ‘quick_start_example1.rmd’ ‘vignette-age.Rmd’ ‘vignette-main.Rmd’

Error: Vignette re-building failed.
Execution halted
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 30, 2026
ERROR r-oldrel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'PedComp.Rmd' using rmarkdown
--- finished re-building 'PedComp.Rmd'

--- re-building 'quick_start_example1.rmd' using rmarkdown
--- finished re-building 'quick_start_example1.rmd'

--- re-building '
...[truncated]...
'

--- re-building 'vignette_mtDNA.pdf.asis' using asis
--- finished re-building 'vignette_mtDNA.pdf.asis'

SUMMARY: processing the following files failed:
  'vignette-age.Rmd' 'vignette-main.Rmd'

Error: Vignette re-building failed.
Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Dependencies Reverse dependencies plyr cli sequoia

Version History

26 tracked
new 3.2.0 Mar 10, 2026
updated 3.2.0 ← 3.1.3 diff Jan 8, 2026
updated 3.1.3 ← 3.0.3 diff Nov 17, 2025
updated 3.0.3 ← 2.11.2 diff Aug 18, 2025
updated 2.11.2 ← 2.11.1 diff May 27, 2024
updated 2.11.1 ← 2.9.0 diff May 26, 2024
updated 2.9.0 ← 2.8.3 diff Feb 29, 2024
updated 2.8.3 ← 2.7.2 diff Dec 18, 2023
updated 2.7.2 ← 2.5.6 diff Sep 5, 2023
updated 2.5.6 ← 2.5.3 diff Apr 21, 2023
updated 2.5.3 ← 2.4.1 diff Mar 20, 2023
updated 2.4.1 ← 2.3.5 diff Jan 7, 2023
updated 2.3.5 ← 2.3.4 diff May 21, 2021
updated 2.3.4 ← 2.3.3 diff May 14, 2021
updated 2.3.3 ← 2.3.2 diff May 2, 2021