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sampbias

Evaluating Geographic Sampling Bias in Biological Collections

v2.0.0 · Feb 6, 2024 · GPL-3
CRAN GitHub Mirror

Description

Evaluating the biasing impact of geographic features such as airports, cities, roads, rivers in datasets of coordinates based biological collection datasets, by Bayesian estimation of the parameters of a Poisson process. Enables also spatial visualization of sampling bias and includes a set of convenience functions for publication level plotting. Also available as 'shiny' app. The reference for the methodology is: Zizka et al. (2020) <doi:10.1111/ecog.05102>.

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CRAN Check Status

1 ERROR
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 ERROR
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (1 non-OK)
ERROR r-oldrel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'Possible_warnings_of_sampbias.Rmd' using rmarkdown
--- finished re-building 'Possible_warnings_of_sampbias.Rmd'

--- re-building 'Using_the_samp_bias_rpackage.Rmd' using rmarkdown
! Package pdftex.def Error: File `b3fa20398a48b18b9924fac38ed58f49d830bd4e.png'
 not found: using draft setting.

Error: processing vignette 'Using_the_samp_bias_rpackage.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/sampbias.Rcheck/vign_test/sampbias/vignettes/Using_the_samp_bias_rpackage.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Using_the_samp_bias_rpackage.log for more info.
--- failed re-building 'Using_the_samp_bias_rpackage.Rmd'

SUMMARY: processing the following file failed:
  'Using_the_samp_bias_rpackage.Rmd'

Error: Vignette re-building failed.
Execution halted

Check History

ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 30, 2026
ERROR r-oldrel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'Possible_warnings_of_sampbias.Rmd' using rmarkdown
--- finished re-building 'Possible_warnings_of_sampbias.Rmd'

--- re-building 'Using_the_samp_bias_rpackage.Rmd' using rmarkdown
! Package pdftex.d
...[truncated]...
. See Using_the_samp_bias_rpackage.log for more info.
--- failed re-building 'Using_the_samp_bias_rpackage.Rmd'

SUMMARY: processing the following file failed:
  'Using_the_samp_bias_rpackage.Rmd'

Error: Vignette re-building failed.
Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Dependencies Reverse dependencies cowplot dplyr forcats ggplot2 magrittr rlang tidyr viridis terra sf rnaturalearth sampbias

Version History

new 2.0.0 Mar 10, 2026