refseqR
Common Computational Operations Working with RefSeq Entries (GenBank)
v1.1.5
·
Oct 29, 2024
·
MIT + file LICENSE
Description
Fetches NCBI data (RefSeq <https://www.ncbi.nlm.nih.gov/refseq/> database) and provides an environment to extract information at the level of gene, mRNA or protein accessions.
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| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 24, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 21, 2026
ERROR
r-oldrel-windows-x86_64
examples
Running examples in 'refseqR-Ex.R' failed The error most likely occurred in: > ### Name: refseq_AAmol_wt > ### Title: Extract the molecular weight from a protein accession > ### Aliases: refseq_AAmol_wt > > ### ** Examples > > # Get the molecular ...[truncated]... _memory(url, handle = handle) : Transferred a partial file [eutils.ncbi.nlm.nih.gov]: transfer closed with outstanding read data remaining Calls: refseq_AAmol_wt ... request_fetch.write_memory -> <Anonymous> -> raise_libcurl_error Execution halted