readepi
Read Data from Relational Database Management Systems and Health Information Systems
v1.0.4
·
Jan 29, 2026
·
MIT + file LICENSE
Description
Import Data from Relational Database Management Systems (RDBMS) and Health Information Systems ('HIS'). The current version of the package supports importing data from RDBMS including 'MS SQL', 'MySQL', 'PostGRESQL', and 'SQLite', as well as from two HIS platforms: 'DHIS2' and 'SORMAS'.
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CRAN Check Status
2
ERROR
3
NOTE
9
OK
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | ERROR |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | ERROR |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (5 non-OK)
ERROR
r-devel-linux-x86_64-debian-gcc
re-building of vignette outputs
Error(s) in re-building vignettes:
...
--- re-building ‘design_principle.Rmd’ using rmarkdown
--- finished re-building ‘design_principle.Rmd’
--- re-building ‘install_drivers.Rmd’ using rmarkdown
--- finished re-building ‘install_drivers.Rmd’
--- re-building ‘query_parameters.Rmd’ using rmarkdown
--- finished re-building ‘query_parameters.Rmd’
--- re-building ‘readepi.Rmd’ using rmarkdown
Quitting from readepi.Rmd:167-175 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_http_500>
Error in `httr2::req_perform()`:
! HTTP 500 Internal Server Error.
---
Backtrace:
▆
1. └─readepi::login(...)
2. └─readepi::dhis2_login(...)
3. └─httr2::req_perform(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'readepi.Rmd' failed with diagnostics:
HTTP 500 Internal Server Error.
--- failed re-building ‘readepi.Rmd’
<pool> Checked-out object deleted before being returned.
<pool> Make sure to `poolReturn()` all objects retrieved with `poolCheckout().`
SUMMARY: processing the following file failed:
‘readepi.Rmd’
Error: Vignette re-building failed.
Execution halted
ERROR
r-devel-macos-arm64
re-building of vignette outputs
Error(s) in re-building vignettes:
--- re-building ‘design_principle.Rmd’ using rmarkdown
--- finished re-building ‘design_principle.Rmd’
--- re-building ‘install_drivers.Rmd’ using rmarkdown
--- finished re-building ‘install_drivers.Rmd’
--- re-building ‘query_parameters.Rmd’ using rmarkdown
--- finished re-building ‘query_parameters.Rmd’
--- re-building ‘readepi.Rmd’ using rmarkdown
Quitting from readepi.Rmd:87-98 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.local()`:
! Failed to connect to database: Error: TLS/SSL error: self-signed certificate in certificate chain
---
Backtrace:
▆
1. └─readepi::login(...)
2. └─pool::dbPool(...)
3. └─pool::poolCreate(...)
4. └─Pool$new(...)
5. └─pool (local) initialize(...)
6. └─private$createObject(error_call = error_call)
7. └─private$factory()
8. ├─DBI::dbConnect(drv, ...)
9. └─RMySQL::dbConnect(drv, ...)
10. └─RMySQL (local) .local(drv, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'readepi.Rmd' failed with diagnostics:
Failed to connect to database: Error: TLS/SSL error: self-signed certificate in certificate chain
--- failed re-building ‘readepi.Rmd’
SUMMARY: processing the following file failed:
‘readepi.Rmd’
Error: Vignette re-building failed.
Execution halted
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 6.3Mb
sub-directories of 1Mb or more:
doc 5.8Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 6.3Mb
sub-directories of 1Mb or more:
doc 5.8Mb
NOTE
r-oldrel-windows-x86_64
installed package size
installed size is 6.2Mb
sub-directories of 1Mb or more:
doc 5.8Mb
Check History
ERROR 10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 30, 2026
ERROR
r-devel-macos-arm64
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building ‘design_principle.Rmd’ using rmarkdown --- finished re-building ‘design_principle.Rmd’ --- re-building ‘install_drivers.Rmd’ using rmarkdown --- finished re-building ‘install_drivers.Rmd’ --- re-bu ...[truncated]... led to connect to database: Error: TLS/SSL error: self-signed certificate in certificate chain --- failed re-building ‘readepi.Rmd’ SUMMARY: processing the following file failed: ‘readepi.Rmd’ Error: Vignette re-building failed. Execution halted
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 6.3Mb
sub-directories of 1Mb or more:
doc 5.8Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 6.3Mb
sub-directories of 1Mb or more:
doc 5.8Mb
NOTE
r-oldrel-windows-x86_64
installed package size
installed size is 6.2Mb
sub-directories of 1Mb or more:
doc 5.8Mb
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 6.3Mb
sub-directories of 1Mb or more:
doc 5.8Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 6.3Mb
sub-directories of 1Mb or more:
doc 5.8Mb
NOTE
r-oldrel-windows-x86_64
installed package size
installed size is 6.2Mb
sub-directories of 1Mb or more:
doc 5.8Mb