rTCRBCRr
Repertoire Analysis of the Detected Clonotype
Description
The 'TRUST4' or 'MiXCR' is used to identify the clonotypes. The goal of 'rTCRBCRr' is to process the results from these clonotyping tools, and analyze the clonotype repertoire metrics based on chain names and IGH isotypes. The manuscript is still under preparation for publication for now. The references describing the methods in this package will be added later.
Downloads
298
Last 30 days
15706th
643
Last 90 days
2.3K
Last year
Trend: +96.1% (30d vs prior 30d)
0
Last 30 days
24
Last 90 days
115
Last year
Trend: -100% (30d vs prior 30d)
0
Last 7 days
5
Last 30 days
0
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
dependencies in R code
Namespace in Imports field not imported from: ‘readr’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘readr’ All declared Imports should be used.
Check History
NOTE 10 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 8, 2026
dependencies in R code
Namespace in Imports field not imported from: ‘readr’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘readr’ All declared Imports should be used.
ERROR 10 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 7, 2026
examples
Running massageExamples to create ‘rTCRBCRr-Ex.R’ failed Error in file(out, "wt") : cannot open the connection Calls: <Anonymous> -> Rd2ex -> file In addition: Warning message: In file(out, "wt") : cannot open file '/tmp/RtmpmpbCiE/file3a76017220c6b2/annotate_chain_name_and_isotype_name.R': No space left on device Execution halted NONE
dependencies in R code
Namespace in Imports field not imported from: ‘readr’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘readr’ All declared Imports should be used.
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
dependencies in R code
Namespace in Imports field not imported from: ‘readr’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘readr’ All declared Imports should be used.
Code
Structure
Lines of code
1,368
Files
70
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
10
Internal functions
4
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
100%
\dontrun example ratio
0%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
No
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.10
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
2
First release
2022-06-27
Latest release
2022-08-16
Avg cadence
50 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.