rEDM

Empirical Dynamic Modeling ('EDM')

v1.15.4 · Apr 6, 2024 · BSD_2_clause + file LICENSE

Description

An implementation of 'EDM' algorithms based on research software developed for internal use at the Sugihara Lab ('UCSD/SIO'). The package is implemented with 'Rcpp' wrappers around the 'cppEDM' library. It implements the 'simplex' projection method from Sugihara & May (1990) <doi:10.1038/344734a0>, the 'S-map' algorithm from Sugihara (1994) <doi:10.1098/rsta.1994.0106>, convergent cross mapping described in Sugihara et al. (2012) <doi:10.1126/science.1227079>, and, 'multiview embedding' described in Ye & Sugihara (2016) <doi:10.1126/science.aag0863>.

Downloads

618

Last 30 days

6332nd

2.4K

Last 90 days

15.7K

Last year

Trend: -10.6% (30d vs prior 30d)

CRAN Check Status

13 NOTE

1 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	195.5s
r-devel-linux-x86_64-debian-gcc	NOTE	152.8s
r-devel-linux-x86_64-fedora-clang	NOTE	272.5s
r-devel-linux-x86_64-fedora-gcc	NOTE	423.1s
r-devel-macos-arm64	NOTE	33s
r-devel-windows-x86_64	NOTE	354s
r-oldrel-macos-arm64	NOTE
r-oldrel-macos-x86_64	NOTE	106s
r-oldrel-windows-x86_64	OK	383s
r-patched-linux-x86_64	NOTE	206.9s
r-release-linux-x86_64	NOTE	205s
r-release-macos-arm64	NOTE
r-release-macos-x86_64	NOTE	119s
r-release-windows-x86_64	NOTE	313s

Check details (13 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

compiled code

File ‘rEDM/libs/rEDM.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

NOTE r-devel-linux-x86_64-debian-gcc

compiled code

File ‘rEDM/libs/rEDM.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

NOTE r-devel-linux-x86_64-fedora-clang

compiled code

File ‘rEDM/libs/rEDM.so’:
  Found ‘_ZNSt3__14coutE’, possibly from ‘std::cout’ (C++)
    Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

NOTE r-devel-linux-x86_64-fedora-gcc

compiled code

File ‘rEDM/libs/rEDM.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

NOTE r-devel-macos-arm64

compiled code

File ‘rEDM/libs/rEDM.so’:
  Found ‘__ZNSt3__14coutE’, possibly from ‘std::cout’ (C++)
    Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

NOTE r-devel-windows-x86_64

compiled code

File 'rEDM/libs/x64/rEDM.dll':
  Found '_ZSt4cout', possibly from 'std::cout' (C++)
    Objects: 'cppEDM/lib/libEDM.a', 'cppEDM/src/libEDM.a'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See 'Writing portable packages' in the 'Writing R Extensions' manual.

NOTE r-oldrel-macos-arm64

installed package size

installed size is 11.9Mb
  sub-directories of 1Mb or more:
    libs  11.1Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is 12.5Mb
  sub-directories of 1Mb or more:
    libs  11.7Mb

NOTE r-patched-linux-x86_64

compiled code

File ‘rEDM/libs/rEDM.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

NOTE r-release-linux-x86_64

compiled code

File ‘rEDM/libs/rEDM.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

NOTE r-release-macos-arm64

compiled code

File ‘rEDM/libs/rEDM.so’:
  Found ‘__ZNSt3__14coutE’, possibly from ‘std::cout’ (C++)
    Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

NOTE r-release-macos-x86_64

compiled code

File ‘rEDM/libs/rEDM.so’:
  Found ‘__ZNSt3__14coutE’, possibly from ‘std::cout’ (C++)
    Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

NOTE r-release-windows-x86_64

compiled code

File 'rEDM/libs/x64/rEDM.dll':
  Found '_ZSt4cout', possibly from 'std::cout' (C++)
    Objects: 'cppEDM/lib/libEDM.a', 'cppEDM/src/libEDM.a'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See 'Writing portable packages' in the 'Writing R Extensions' manual.

Check History

NOTE 1 OK · 13 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

compiled code

File ‘rEDM/libs/rEDM.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

NOTE r-devel-linux-x86_64-debian-gcc

compiled code

File ‘rEDM/libs/rEDM.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

NOTE r-devel-linux-x86_64-fedora-clang

compiled code

File ‘rEDM/libs/rEDM.so’:
  Found ‘_ZNSt3__14coutE’, possibly from ‘std::cout’ (C++)
    Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

NOTE r-devel-linux-x86_64-fedora-gcc

compiled code

File ‘rEDM/libs/rEDM.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

NOTE r-devel-macos-arm64

compiled code

File ‘rEDM/libs/rEDM.so’:
  Found ‘__ZNSt3__14coutE’, possibly from ‘std::cout’ (C++)
    Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

NOTE r-devel-windows-x86_64

compiled code

File 'rEDM/libs/x64/rEDM.dll':
  Found '_ZSt4cout', possibly from 'std::cout' (C++)
    Objects: 'cppEDM/lib/libEDM.a', 'cppEDM/src/libEDM.a'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See 'Writing portable packages' in the 'Writing R Extensions' manual.

NOTE r-patched-linux-x86_64

compiled code

File ‘rEDM/libs/rEDM.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

NOTE r-release-linux-x86_64

compiled code

File ‘rEDM/libs/rEDM.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

NOTE r-release-macos-arm64

compiled code

File ‘rEDM/libs/rEDM.so’:
  Found ‘__ZNSt3__14coutE’, possibly from ‘std::cout’ (C++)
    Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

NOTE r-release-macos-x86_64

compiled code

File ‘rEDM/libs/rEDM.so’:
  Found ‘__ZNSt3__14coutE’, possibly from ‘std::cout’ (C++)
    Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

NOTE r-release-windows-x86_64

compiled code

File 'rEDM/libs/x64/rEDM.dll':
  Found '_ZSt4cout', possibly from 'std::cout' (C++)
    Objects: 'cppEDM/lib/libEDM.a', 'cppEDM/src/libEDM.a'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.

See 'Writing portable packages' in the 'Writing R Extensions' manual.

NOTE r-oldrel-macos-arm64

installed package size

installed size is 11.9Mb
  sub-directories of 1Mb or more:
    libs  11.1Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is 12.5Mb
  sub-directories of 1Mb or more:
    libs  11.7Mb

Reverse Dependencies (1)

imports

EWSmethods

Dependency Network

Version History

new 1.15.4 Mar 10, 2026

updated 1.15.4 ← 1.15.3 diff Apr 5, 2024

updated 1.15.3 ← 1.15.1 diff Jan 9, 2024

updated 1.15.1 ← 1.15.0 diff Nov 9, 2023

updated 1.15.0 ← 1.14.3 diff Oct 22, 2023

updated 1.14.3 ← 1.14.0 diff Jul 6, 2023

updated 1.14.0 ← 1.13.1 diff Jan 8, 2023

updated 1.13.1 ← 1.13.0 diff Aug 5, 2022

updated 1.13.0 ← 1.12.2 diff Jun 21, 2022

updated 1.12.2 ← 1.12.0 diff May 31, 2022

updated 1.12.0 ← 1.11.0 diff May 14, 2022

updated 1.11.0 ← 1.10.3 diff Apr 14, 2022

updated 1.10.3 ← 1.10.2 diff Mar 30, 2022

updated 1.10.2 ← 1.10.1 diff Feb 12, 2022

updated 1.10.1 ← 1.10.0 diff Jan 21, 2022

updated 1.10.0 ← 1.9.3 diff Dec 18, 2021

updated 1.9.3 ← 1.9.2 diff Oct 15, 2021

updated 1.9.2 ← 1.9.1 diff Sep 15, 2021

updated 1.9.1 ← 1.9.0 diff Aug 7, 2021

updated 1.9.0 ← 1.8.2 diff Jun 21, 2021