qtl2pleio

Testing Pleiotropy in Multiparental Populations

v1.4.4 · Apr 25, 2026 · MIT + file LICENSE

Description

We implement an adaptation of Jiang & Zeng's (1995) <doi:10.1093/genetics/140.3.1111> likelihood ratio test for testing the null hypothesis of pleiotropy against the alternative hypothesis, two separate quantitative trait loci. The test differs from that in Jiang & Zeng (1995) and that in Tian et al. (2016) <doi:10.1534/genetics.115.183624> in that our test accommodates multiparental populations.

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CRAN Check Status

13 OK

Show all 13 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	OK	169s
r-devel-linux-x86_64-debian-gcc	OK	135s
r-devel-linux-x86_64-fedora-clang	OK	237.1s
r-devel-linux-x86_64-fedora-gcc	OK	285.5s
r-devel-windows-x86_64	OK	208s
r-oldrel-macos-arm64	OK	28s
r-oldrel-macos-x86_64	OK	111s
r-oldrel-windows-x86_64	OK	269s
r-patched-linux-x86_64	OK	175.4s
r-release-linux-x86_64	OK
r-release-macos-arm64	OK	30s
r-release-macos-x86_64	OK	118s
r-release-windows-x86_64	OK	229s

Check History

OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 29, 2026

NOTE 9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Frederick J Boehm <frederick.boehm@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Frederick J Boehm <frederick.boehm@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTE r-oldrel-macos-arm64

installed package size

installed size is 27.2Mb
  sub-directories of 1Mb or more:
    libs  26.9Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is 27.6Mb
  sub-directories of 1Mb or more:
    libs  27.3Mb

NOTE r-oldrel-windows-x86_64

LazyData

'LazyData' is specified without a 'data' directory

ERROR 8 OK · 5 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Frederick J Boehm <frederick.boehm@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Frederick J Boehm <frederick.boehm@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

ERROR r-devel-windows-x86_64

whether package can be installed

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.6/qtl2pleio.Rcheck/00install.out' for details.

NOTE r-oldrel-macos-arm64

installed package size

installed size is 27.2Mb
  sub-directories of 1Mb or more:
    libs  26.9Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is 27.6Mb
  sub-directories of 1Mb or more:
    libs  27.3Mb

NOTE r-oldrel-windows-x86_64

LazyData

'LazyData' is specified without a 'data' directory

NOTE 9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Frederick J Boehm <frederick.boehm@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Frederick J Boehm <frederick.boehm@gmail.com>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTE r-oldrel-macos-arm64

installed package size

installed size is 27.2Mb
  sub-directories of 1Mb or more:
    libs  26.9Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is 27.6Mb
  sub-directories of 1Mb or more:
    libs  27.3Mb

NOTE r-oldrel-windows-x86_64

LazyData

'LazyData' is specified without a 'data' directory

Dependency Network

Version History

6 tracked

updated 1.4.4 ← 1.4.3 diff Apr 25, 2026

new 1.4.3 Mar 10, 2026

updated 1.4.3 ← 1.4.1 diff Dec 1, 2020

updated 1.4.1 ← 1.3.0 diff Oct 28, 2020

updated 1.3.0 ← 1.2.3 diff Jun 29, 2020

new 1.2.3 Nov 4, 2019