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psborrow2

Bayesian Dynamic Borrowing Analysis and Simulation

v0.0.4.0 · Feb 12, 2025 · Apache License 2.0

Description

Bayesian dynamic borrowing is an approach to incorporating external data to supplement a randomized, controlled trial analysis in which external data are incorporated in a dynamic way (e.g., based on similarity of outcomes); see Viele 2013 <doi:10.1002/pst.1589> for an overview. This package implements the hierarchical commensurate prior approach to dynamic borrowing as described in Hobbes 2011 <doi:10.1111/j.1541-0420.2011.01564.x>. There are three main functionalities. First, 'psborrow2' provides a user-friendly interface for applying dynamic borrowing on the study results handles the Markov Chain Monte Carlo sampling on behalf of the user. Second, 'psborrow2' provides a simulation framework to compare different borrowing parameters (e.g. full borrowing, no borrowing, dynamic borrowing) and other trial and borrowing characteristics (e.g. sample size, covariates) in a unified way. Third, 'psborrow2' provides a set of functions to generate data for simulation studies, and also allows the user to specify their own data generation process. This package is designed to use the sampling functions from 'cmdstanr' which can be installed from <https://stan-dev.r-universe.dev>.

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installed package size

installed size is  5.4Mb
  sub-directories of 1Mb or more:
    doc   3.9Mb
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package dependencies

Package suggested but not available for checking: ‘cmdstanr’
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  5.3Mb
  sub-directories of 1Mb or more:
    doc   3.9Mb
NOTE r-oldrel-macos-x86_64

package dependencies

Package suggested but not available for checking: ‘cmdstanr’
NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.3Mb
  sub-directories of 1Mb or more:
    doc   3.9Mb
NOTE r-oldrel-windows-x86_64

package dependencies

Package suggested but not available for checking: 'cmdstanr'

Check History

NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-oldrel-macos-arm64

package dependencies

Package suggested but not available for checking: ‘cmdstanr’
NOTE r-oldrel-macos-x86_64

package dependencies

Package suggested but not available for checking: ‘cmdstanr’
NOTE r-oldrel-windows-x86_64

package dependencies

Package suggested but not available for checking: 'cmdstanr'

Dependency Network

Dependencies Reverse dependencies checkmate glue posterior generics Matrix mvtnorm future simsurv psborrow2

Version History

new 0.0.4.0 Mar 10, 2026
updated 0.0.4.0 ← 0.0.3.4 diff Feb 11, 2025
updated 0.0.3.4 ← 0.0.3.3 diff Apr 29, 2024
updated 0.0.3.3 ← 0.0.3.2 diff Apr 11, 2024
new 0.0.3.2 Apr 2, 2024