poolfstat
Computing f-Statistics and Building Admixture Graphs Based on Allele Count or Pool-Seq Read Count Data
Description
Functions for the computation of F-, f- and D-statistics (e.g., Fst, hierarchical F-statistics, Patterson's F2, F3, F3*, F4 and D parameters) in population genomics studies from allele count or Pool-Seq read count data and for the fitting, building and visualization of admixture graphs. The package also includes several utilities to manipulate Pool-Seq data stored in standard format (e.g., such as 'vcf' files or 'rsync' files generated by the the 'PoPoolation' software) and perform conversion to alternative format (as used in the 'BayPass' and 'SelEstim' software). As of version 2.0, the package also includes utilities to manipulate standard allele count data (e.g., stored in 'TreeMix', 'BayPass' and 'SelEstim' format, see the Package vignette for details).
Downloads
426
Last 30 days
9392nd
1.2K
Last 90 days
6.4K
Last year
Trend: +41.1% (30d vs prior 30d)
40
Last 30 days
139
Last 90 days
465
Last year
Trend: -40.3% (30d vs prior 30d)
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
package dependencies
Package required but not available: ‘DiagrammeR’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
doc 1.0Mb
libs 2.9Mb
installed package size
installed size is 5.3Mb
sub-directories of 1Mb or more:
doc 1.0Mb
libs 2.4Mb
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/poolfstat.Rcheck/00install.out' for details.
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
doc 1.0Mb
libs 2.9Mb
installed package size
installed size is 5.3Mb
sub-directories of 1Mb or more:
doc 1.0Mb
libs 2.4Mb
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 10, 2026
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
doc 1.0Mb
libs 2.9Mb
installed package size
installed size is 5.3Mb
sub-directories of 1Mb or more:
doc 1.0Mb
libs 2.4Mb
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 9, 2026
whether package can be installed
Installation failed. See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/poolfstat.Rcheck/00install.out’ for details.
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
doc 1.0Mb
libs 2.9Mb
installed package size
installed size is 5.3Mb
sub-directories of 1Mb or more:
doc 1.0Mb
libs 2.4Mb
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
doc 1.0Mb
libs 2.9Mb
installed package size
installed size is 5.3Mb
sub-directories of 1Mb or more:
doc 1.0Mb
libs 2.4Mb