poolfstat
Computing f-Statistics and Building Admixture Graphs Based on Allele Count or Pool-Seq Read Count Data
Description
Functions for the computation of F-, f- and D-statistics (e.g., Fst, hierarchical F-statistics, Patterson's F2, F3, F3*, F4 and D parameters) in population genomics studies from allele count or Pool-Seq read count data and for the fitting, building and visualization of admixture graphs. The package also includes several utilities to manipulate Pool-Seq data stored in standard format (e.g., such as 'vcf' files or 'rsync' files generated by the the 'PoPoolation' software) and perform conversion to alternative format (as used in the 'BayPass' and 'SelEstim' software). As of version 2.0, the package also includes utilities to manipulate standard allele count data (e.g., stored in 'TreeMix', 'BayPass' and 'SelEstim' format, see the Package vignette for details).
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| r-devel-linux-x86_64-debian-clang | OK |
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| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
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| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
doc 1.0Mb
libs 2.9Mb
installed package size
installed size is 5.3Mb
sub-directories of 1Mb or more:
doc 1.0Mb
libs 2.4Mb
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
doc 1.0Mb
libs 2.9Mb
installed package size
installed size is 5.3Mb
sub-directories of 1Mb or more:
doc 1.0Mb
libs 2.4Mb