pleioh2g

0.1.3

Estimation of Pleiotropic Heritability from Genome-Wide Association Studies (GWAS) Summary Statistics

0packages depend

2.3Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Yujie ZhaoFirst published 2025-10-284 releasesCRAN page ↗

Provides tools to compute unbiased pleiotropic heritability estimates of complex diseases from genome-wide association studies (GWAS) summary statistics. We estimate pleiotropic heritability from GWAS summary statistics by estimating the proportion of variance explained from an estimated genetic correlation matrix (Bulik-Sullivan et al. 2015 <doi:10.1038/ng.3406>) and employing a Monte-Carlo bias correction procedure to account for sampling noise in genetic correlation estimates.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("pleioh2g")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# one-time r2u setup for Ubuntu (noble)

curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash

# then install

sudo apt install r-cran-pleioh2g

Fast Ubuntu binaries via r2u (no compilation). Run the setup once per machine.

bspm (used by r2u) also needs make: sudo apt install make

sudo dnf copr enable iucar/cran

sudo dnf install R-CRAN-pleioh2g

RPMs from the iucar/cran COPR, rebuilt from CRAN.

sudo zypper install R-pleioh2g

RPMs auto-built from CRAN on openSUSE OBS.

Health

CRAN checks

13OK

Code health

Yes

Tests · ratio 0.03

not tracked

Coverage

Yes

Vignettes

README

Dependencies · direct

Check history

OK2026-06-08
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-07
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Downloads

2.3K

CRAN downloads in the past year

Rank #16,126 · ~6/day · ~189/mo

35630 days

70290 days

2.3K1 year

Also on91 r2u19 autocran

Source & community

Repository stars, issues, and contributor activity are not tracked yet.

Dependencies

Declared dependencies

16 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (14)

data.table dplyr stats baserlang mvtnorm fs arrow checkmate cli gdata glue purrr tibble vroom

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code

3,641Lines of code

23Exported functions

Code & tests

Open call graph →

Line coverage

–

Expression

–

Tests / Examples

–

Functions

23 0 exported

Complexity

6.1 avg / 29 max

Call network

23 nodes / 34 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (1)

Maintainer (1)

Yujie Zhao

Author, Maintainer

Release timeline

4 releases. Pick two to compare their code metrics; R releases are shown for context.

0.1.3Latest
2026-06-09 · current release
R
R 4.6.0 released · 2026-04-24
0.1.2
2026-03-09 · diff ↗
0.1.1
2026-02-19 · diff ↗
0.1.0
2025-10-28

Package metadata

First published: 2025-10-28
Total releases: 4 / 1 yrs
License: GPL-3 OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet