plantTracker
Extract Demographic and Competition Data from Fine-Scale Maps
v1.2.1
·
Jan 9, 2026
·
MIT + file LICENSE
Description
Extracts growth, survival, and local neighborhood density information from repeated, fine-scale maps of organism occurrence. Further information about this package can be found in our journal article, "plantTracker: An R package to translate maps of plant occurrence into demographic data" published in 2022 in Methods in Ecology and Evolution (Stears, et al., 2022) <doi:10.1111/2041-210X.13950>.
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CRAN Check Status
13
OK
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
ERROR
r-devel-windows-x86_64
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building 'Suggested_plantTracker_Workflow.Rmd' using rmarkdown Warning in options[opts_class] <- Map(code_folding_class, options[opts_class], : number of items to replace is not a multiple of replacement l ...[truncated]... not a multiple of replacement length --- finished re-building 'Using_the_plantTracker_trackSpp_function.Rmd' SUMMARY: processing the following file failed: 'Suggested_plantTracker_Workflow.Rmd' Error: Vignette re-building failed. Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 15, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 10, 2026
ERROR
r-devel-windows-x86_64
tests
Running 'spelling.R' [0s]
Running 'testthat.R' [22s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(plantTracker)
>
> test_check("plantTracker")
Site: AZ
-- Quadrat: SG2
---- Spec
...[truncated]...
- Quadrat: SG4
---- Species: Bouteloua rothrockii
Note: Individuals in year 1927 have a value of 'NA' in the 'survives_tplus1' and 'size_tplus1' columns because 1927 is the last year of sampling in this quadrat.
Site: AZ
-- Quadrat: SG2
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 31, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 27, 2026
ERROR
r-devel-windows-x86_64
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building 'Suggested_plantTracker_Workflow.Rmd' using rmarkdown Warning in options[opts_class] <- Map(code_folding_class, options[opts_class], : number of items to replace is not a multiple of replacement l ...[truncated]... not a multiple of replacement length --- finished re-building 'Using_the_plantTracker_trackSpp_function.Rmd' SUMMARY: processing the following file failed: 'Suggested_plantTracker_Workflow.Rmd' Error: Vignette re-building failed. Execution halted