phylotypr
Classifying DNA Sequences to Taxonomic Groupings
Description
Classification based analysis of DNA sequences to taxonomic groupings. This package primarily implements Naive Bayesian Classifier from the Ribosomal Database Project. This approach has traditionally been used to classify 16S rRNA gene sequences to bacterial taxonomic outlines; however, it can be used for any type of gene sequence. The method was originally described by Wang, Garrity, Tiedje, and Cole in Applied and Environmental Microbiology 73(16):5261-7 <doi:10.1128/AEM.00062-07>. The package also provides functions to read in 'FASTA'-formatted sequence data.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
installed package size
installed size is 5.3Mb
sub-directories of 1Mb or more:
data 1.6Mb
doc 2.1Mb
installed package size
installed size is 5.4Mb
sub-directories of 1Mb or more:
data 1.6Mb
doc 2.1Mb
installed package size
installed size is 5.5Mb
sub-directories of 1Mb or more:
data 1.6Mb
doc 2.1Mb
ERROR 10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/phylotypr.Rcheck/00install.out' for details.
installed package size
installed size is 5.3Mb
sub-directories of 1Mb or more:
data 1.6Mb
doc 2.1Mb
installed package size
installed size is 5.4Mb
sub-directories of 1Mb or more:
data 1.6Mb
doc 2.1Mb
installed package size
installed size is 5.5Mb
sub-directories of 1Mb or more:
data 1.6Mb
doc 2.1Mb
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
installed package size
installed size is 5.3Mb
sub-directories of 1Mb or more:
data 1.6Mb
doc 2.1Mb
installed package size
installed size is 5.4Mb
sub-directories of 1Mb or more:
data 1.6Mb
doc 2.1Mb
installed package size
installed size is 5.5Mb
sub-directories of 1Mb or more:
data 1.6Mb
doc 2.1Mb