phylotypr
Classifying DNA Sequences to Taxonomic Groupings
Description
Classification based analysis of DNA sequences to taxonomic groupings. This package primarily implements Naive Bayesian Classifier from the Ribosomal Database Project. This approach has traditionally been used to classify 16S rRNA gene sequences to bacterial taxonomic outlines; however, it can be used for any type of gene sequence. The method was originally described by Wang, Garrity, Tiedje, and Cole in Applied and Environmental Microbiology 73(16):5261-7 <doi:10.1128/AEM.00062-07>. The package also provides functions to read in 'FASTA'-formatted sequence data.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (3 non-OK)
installed package size
installed size is 5.3Mb
sub-directories of 1Mb or more:
data 1.6Mb
doc 2.1Mb
installed package size
installed size is 5.4Mb
sub-directories of 1Mb or more:
data 1.6Mb
doc 2.1Mb
installed package size
installed size is 5.5Mb
sub-directories of 1Mb or more:
data 1.6Mb
doc 2.1Mb
Check History
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
installed package size
installed size is 5.3Mb
sub-directories of 1Mb or more:
data 1.6Mb
doc 2.1Mb
installed package size
installed size is 5.4Mb
sub-directories of 1Mb or more:
data 1.6Mb
doc 2.1Mb
installed package size
installed size is 5.5Mb
sub-directories of 1Mb or more:
data 1.6Mb
doc 2.1Mb