pepdiff
Differential Abundance Analysis for Phosphoproteomics Data
v1.0.0
·
Apr 2, 2026
·
MIT + file LICENSE
Description
Provides tools for analyzing differential abundance in proteomics experiments. Implements S3 classes for data management and supports Generalized Linear Models (GLM; Nelder and Wedderburn (1972) <doi:10.2307/2344614>), Aligned Rank Transform (ART; Wobbrock et al. (2011) <doi:10.1145/1978942.1978963>), and pairwise test methods for statistical analysis. Includes visualization functions for Principal Component Analysis (PCA), volcano plots, and heatmaps.
Downloads
15
Last 30 days
23709th
15
Last 90 days
15
Last year
CRAN Check Status
7
OK
Show all 7 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
Check History
OK 3 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 3, 2026
Dependency Network
Version History
new
1.0.0
Apr 2, 2026