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pedprobr

Probability Computations on Pedigrees

v1.0.1 · May 7, 2025 · GPL (>= 2)

Description

An implementation of the Elston-Stewart algorithm for calculating pedigree likelihoods given genetic marker data (Elston and Stewart (1971) <doi:10.1159/000152448>). The standard algorithm is extended to allow inbred founders. 'pedprobr' is part of the 'pedsuite', a collection of packages for pedigree analysis in R. In particular, 'pedprobr' depends on 'pedtools' for pedigree manipulations and 'pedmut' for mutation modelling. For more information, see 'Pedigree Analysis in R' (Vigeland, 2021, ISBN:9780128244302).

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CRAN Check Status

14 OK
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Reverse Dependencies (8)

depends

Dependency Network

Dependencies Reverse dependencies pedtools pedmut pedsuite KLINK dvir forrel paramlink2 pedbuildr segregatr simDNAmixtures pedprobr

Version History

new 1.0.1 Mar 10, 2026
updated 1.0.1 ← 1.0.0 diff May 6, 2025
updated 1.0.0 ← 0.9.5 diff May 4, 2025
updated 0.9.5 ← 0.9.4 diff Mar 18, 2025
updated 0.9.4 ← 0.9.3 diff May 7, 2024
updated 0.9.3 ← 0.9.2 diff Apr 1, 2024
updated 0.9.2 ← 0.8.0 diff Feb 27, 2024
updated 0.8.0 ← 0.7.1 diff Apr 12, 2023
updated 0.7.1 ← 0.7.0 diff Feb 12, 2023
updated 0.7.0 ← 0.6.1 diff Jun 6, 2022
updated 0.6.1 ← 0.6.0 diff Jan 4, 2022
updated 0.6.0 ← 0.5.0 diff Jan 2, 2022
updated 0.5.0 ← 0.4.0 diff Mar 26, 2021
updated 0.4.0 ← 0.3 diff Nov 12, 2020
updated 0.3 ← 0.2.0 diff Jul 4, 2020
updated 0.2.0 ← 0.1.0 diff Mar 20, 2020
new 0.1.0 Oct 31, 2019