patternize
Quantification of Color Pattern Variation
v0.0.5
·
Aug 22, 2023
·
GPL-3
Description
Quantification of variation in organismal color patterns as obtained from image data. Patternize defines homology between pattern positions across images either through fixed landmarks or image registration. Pattern identification is performed by categorizing the distribution of colors using RGB thresholds or image segmentation.
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CRAN Check Status
13
NOTE
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-windows-x86_64 | NOTE |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | NOTE |
| r-release-linux-x86_64 | NOTE |
| r-release-macos-arm64 | NOTE |
| r-release-macos-x86_64 | NOTE |
| r-release-windows-x86_64 | NOTE |
Check details (13 non-OK)
NOTE
r-devel-linux-x86_64-debian-clang
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-devel-linux-x86_64-debian-gcc
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
Check History
NOTE 0 OK · 13 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
NOTE
r-devel-linux-x86_64-debian-clang
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-devel-linux-x86_64-debian-gcc
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
ERROR 0 OK · 12 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
NOTE
r-devel-linux-x86_64-debian-clang
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
ERROR
r-devel-linux-x86_64-debian-gcc
package dependencies
Package required but not available: ‘geomorph’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE
r-devel-linux-x86_64-debian-clang
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-devel-linux-x86_64-debian-gcc
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-devel-macos-arm64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) plotHeat.Rd:113: Lost braces
113 | code{\link[patternize]{patPCA}}, as 'one' when visualizing single image or as 'multi' for multi
| ^