palaeoSig
Significance Tests for Palaeoenvironmental Reconstructions
Description
Several tests of quantitative palaeoenvironmental reconstructions from microfossil assemblages, including the null model tests of the statistically significant of reconstructions developed by Telford and Birks (2011) <doi:10.1016/j.quascirev.2011.03.002>, and tests of the effect of spatial autocorrelation on transfer function model performance using methods from Telford and Birks (2009) <doi:10.1016/j.quascirev.2008.12.020> and Trachsel and Telford (2016) <doi:10.5194/cp-12-1215-2016>. Age-depth models with generalized mixed-effect regression from Heegaard et al (2005) <doi:10.1191/0959683605hl836rr> are also included.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | ERROR |
| r-devel-linux-x86_64-fedora-gcc | ERROR |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
re-building of vignette outputs
Error(s) in re-building vignettes:
--- re-building ‘h-block-crossvalidation.Rmd’ using rmarkdown
# A tibble: 1 × 1
RMSE
<dbl>
1 1.28
# A tibble: 1 × 1
h
<dbl>
1 600
# A tibble: 1 × 1
h
<dbl>
1 600
--- finished re-building ‘h-block-crossvalidation.Rmd’
Warning: elapsed-time limit of 1 hours reached for sub-process
--- re-building ‘randomTF-spatial.Rmd’ using rmarkdown
OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
SUMMARY: processing the following file failed:
‘randomTF-spatial.Rmd’
Error: Vignette re-building failed.
Execution halted
re-building of vignette outputs
Error(s) in re-building vignettes:
--- re-building ‘h-block-crossvalidation.Rmd’ using rmarkdown
# A tibble: 1 × 1
RMSE
<dbl>
1 1.28
# A tibble: 1 × 1
h
<dbl>
1 600
# A tibble: 1 × 1
h
<dbl>
1 600
--- finished re-building ‘h-block-crossvalidation.Rmd’
--- re-building ‘randomTF-spatial.Rmd’ using rmarkdown
SUMMARY: processing the following file failed:
‘randomTF-spatial.Rmd’
Error: Vignette re-building failed.
Execution halted
Check History
ERROR 12 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE Mar 10, 2026
re-building of vignette outputs
Error(s) in re-building vignettes:
--- re-building ‘h-block-crossvalidation.Rmd’ using rmarkdown
# A tibble: 1 × 1
RMSE
<dbl>
1 1.28
# A tibble: 1 × 1
h
<dbl>
1 600
# A tibble: 1 × 1
h
<dbl>
1 600
[WARNING] Deprecated: --hig
...[truncated]...
Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
SUMMARY: processing the following file failed:
‘randomTF-spatial.Rmd’
Error: Vignette re-building failed.
Execution halted
re-building of vignette outputs
Error(s) in re-building vignettes:
--- re-building ‘h-block-crossvalidation.Rmd’ using rmarkdown
# A tibble: 1 × 1
RMSE
<dbl>
1 1.28
# A tibble: 1 × 1
h
<dbl>
1 600
# A tibble: 1 × 1
h
<dbl>
1 600
[WARNING] Deprecated: --hig
...[truncated]...
.Rmd’
Warning: elapsed-time limit of 1 hours reached for sub-process
--- re-building ‘randomTF-spatial.Rmd’ using rmarkdown
SUMMARY: processing the following file failed:
‘randomTF-spatial.Rmd’
Error: Vignette re-building failed.
Execution halted