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noia

Implementation of the Natural and Orthogonal InterAction (NOIA) Model

v0.97.3 · Mar 8, 2023 · GPL-2
CRAN GitHub Mirror

Description

The NOIA model, as described extensively in Alvarez-Castro & Carlborg (2007), is a framework facilitating the estimation of genetic effects and genotype-to-phenotype maps. This package provides the basic tools to perform linear and multilinear regressions from real populations (provided the phenotype and the genotype of every individuals), estimating the genetic effects from different reference points, the genotypic values, and the decomposition of genetic variances in a multi-locus, 2 alleles system. This package is presented in Le Rouzic & Alvarez-Castro (2008).

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r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang NOTE
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r-release-windows-x86_64 NOTE
Check details (15 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Arnaud Le Rouzic <arnaud.le-rouzic@universite-paris-saclay.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arnaud",
                      family = "Le Rouzic",
                      role = c("aut", "cre"),
                      email = "arnaud.le-rouzic@universite-paris-saclay.fr",
                      comment = c(ROR = "2007-2015")),
               person(given = c("Arne", "B."),
                      family = "Gjuvsland",
                      role = "aut",
                      comment = "2010"),
               person(given = "Olivier",
                      family = "Ariste",
                      role = "aut",
                      comment = "2010"))
as necessary.
NOTE r-devel-linux-x86_64-debian-clang

Rd files

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checkRd: (-1) simulatePop.Rd:45: Lost braces in \itemize; meant \describe ?
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Arnaud Le Rouzic <arnaud.le-rouzic@universite-paris-saclay.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arnaud",
                      family = "Le Rouzic",
                      role = c("aut", "cre"),
                      email = "arnaud.le-rouzic@universite-paris-saclay.fr",
                      comment = c(ROR = "2007-2015")),
               person(given = c("Arne", "B."),
                      family = "Gjuvsland",
                      role = "aut",
                      comment = "2010"),
               person(given = "Olivier",
                      family = "Ariste",
                      role = "aut",
                      comment = "2010"))
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

Rd files

checkRd: (-1) simulatePop.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:41: Lost braces in \itemize; meant \describe ?
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Check History

NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Arnaud Le Rouzic <arnaud.le-rouzic@universite-paris-saclay.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arnaud",
                      family = "Le Rouzic",
                      role 
...[truncated]...

                      role = "aut",
                      comment = "2010"),
               person(given = "Olivier",
                      family = "Ariste",
                      role = "aut",
                      comment = "2010"))
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Arnaud Le Rouzic <arnaud.le-rouzic@universite-paris-saclay.fr>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Arnaud",
                      family = "Le Rouzic",
                      role 
...[truncated]...

                      role = "aut",
                      comment = "2010"),
               person(given = "Olivier",
                      family = "Ariste",
                      role = "aut",
                      comment = "2010"))
as necessary.
NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) simulatePop.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) simulatePop.Rd:41: Lost braces in \itemize; meant \describe ?
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Code

Structure

Lines of code

2,683

Files

75

Compiled share

0%

Has compiled src

No

Language breakdown

R 1,920 (71.6%)Docs 763 (28.4%)

API

Exported functions

11

Internal functions

0

Recent export changes

v0.97.3+1 marginallocus
v0.96+10 linearRegression, multilinearRegression, geneticEffects +7 more

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

–

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

66.7%

\dontrun example ratio

0%

Roxygen coverage

100%

Has pkgdown

No

NEWS present

No

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

–

System requirements

–

C++ standard

–

License

GPL-2

License flags

SPDX valid, OSI approved

History

Versions

9

First release

2000-01-26

Latest release

2023-03-08

Avg cadence

554 days

Cold removal rate

–

Dep drift

0

LOC over versions

v0.92.1: 2,147 LOCv0.91: 1,670 LOCv0.92: 2,144 LOCv0.93: 2,209 LOCv0.94: 2,591 LOCv0.94.1: 2,590 LOCv0.96: 2,593 LOCv0.97.1: 2,500 LOCv0.97.3: 2,683 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Version History

10 tracked
new 0.97.3 Mar 10, 2026
updated 0.97.3 ← 0.97.1 diff Mar 7, 2023
updated 0.97.1 ← 0.96 diff Jan 7, 2015
updated 0.96 ← 0.94.1 diff Apr 22, 2012
updated 0.94.1 ← 0.94 diff Apr 19, 2010
updated 0.94 ← 0.93 diff Mar 1, 2010
updated 0.93 ← 0.92.1 diff Feb 15, 2009
updated 0.92.1 ← 0.92 diff Jan 25, 2009
updated 0.92 ← 0.91 diff Jul 31, 2008
new 0.91 Apr 26, 2008