Description
Pipeline for Genome-Wide Association Study using Multi-Locus Mixed Model from Segura V, Vilhjálmsson BJ et al. (2012) <doi:10.1038/ng.2314>. The pipeline include detection of associated SNPs with MLMM, model selection by lowest eBIC and p-value threshold, estimation of the effects of the SNPs in the selected model and graphical functions.
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| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Clement Mabire <clement.mabire@inra.fr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Fanny",
family = "Bonnafous",
role = "aut"),
person(given = "Alexandra",
family = "Duhnen",
role = "aut"),
person(given = "Louise",
family = "Gody",
role = "aut"),
person(given = "Olivier",
family = "Guillaume",
role = c("aut", "cre")),
person(given = "Brigitte",
family = "Mangin",
role = "aut"),
person(given = "Prune",
family = "Pegot-Espagnet",
role = "aut"),
person(given = "Vincent",
family = "Segura",
role = "aut"),
person(given = c("Bjarni", "J."),
family = "Vilhjalmsson",
role = "aut"),
person(given = "Clement",
family = "Mabire",
role = c("aut", "cre"),
email = "clement.mabire@inra.fr"),
person(given = "Timothee",
family = "Flutre",
role = "aut"))
as necessary.
Found the following URLs which should use \doi (with the DOI name only):
File ‘mlmm.gwas.Rd’:
https://doi.org/10.1007/s00122-017-3003-4
https://doi.org/10.1038/ng.2314
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Clement Mabire <clement.mabire@inra.fr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Fanny",
family = "Bonnafous",
role = "aut"),
person(given = "Alexandra",
family = "Duhnen",
role = "aut"),
person(given = "Louise",
family = "Gody",
role = "aut"),
person(given = "Olivier",
family = "Guillaume",
role = c("aut", "cre")),
person(given = "Brigitte",
family = "Mangin",
role = "aut"),
person(given = "Prune",
family = "Pegot-Espagnet",
role = "aut"),
person(given = "Vincent",
family = "Segura",
role = "aut"),
person(given = c("Bjarni", "J."),
family = "Vilhjalmsson",
role = "aut"),
person(given = "Clement",
family = "Mabire",
role = c("aut", "cre"),
email = "clement.mabire@inra.fr"),
person(given = "Timothee",
family = "Flutre",
role = "aut"))
as necessary.
Found the following URLs which should use \doi (with the DOI name only):
File ‘mlmm.gwas.Rd’:
https://doi.org/10.1007/s00122-017-3003-4
https://doi.org/10.1038/ng.2314
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Clement Mabire <clement.mabire@inra.fr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Fanny",
family = "Bonnafous",
role = "aut"),
...[truncated]...
family = "Flutre",
role = "aut"))
as necessary.
Found the following URLs which should use \doi (with the DOI name only):
File ‘mlmm.gwas.Rd’:
https://doi.org/10.1007/s00122-017-3003-4
https://doi.org/10.1038/ng.2314
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Clement Mabire <clement.mabire@inra.fr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Fanny",
family = "Bonnafous",
role = "aut"),
...[truncated]...
family = "Flutre",
role = "aut"))
as necessary.
Found the following URLs which should use \doi (with the DOI name only):
File ‘mlmm.gwas.Rd’:
https://doi.org/10.1007/s00122-017-3003-4
https://doi.org/10.1038/ng.2314