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misha

Toolkit for Analysis of Genomic Data

v5.6.6 · Mar 19, 2026 · MIT + file LICENSE
CRAN GitHub Mirror

Description

A toolkit for analysis of genomic data. The 'misha' package implements an efficient data structure for storing genomic data, and provides a set of functions for data extraction, manipulation and analysis. Some of the 2D genome algorithms were described in Yaffe and Tanay (2011) <doi:10.1038/ng.947>.

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CRAN Check Status

7 NOTE
4 OK
Show all 11 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang NOTE
r-devel-linux-x86_64-fedora-gcc NOTE
r-devel-macos-arm64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-patched-linux-x86_64 NOTE
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
Check details (7 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

compiled code

File ‘misha/libs/misha.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
NOTE r-devel-linux-x86_64-debian-gcc

compiled code

File ‘misha/libs/misha.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
NOTE r-devel-linux-x86_64-fedora-clang

compiled code

File ‘misha/libs/misha.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
NOTE r-devel-linux-x86_64-fedora-gcc

compiled code

File ‘misha/libs/misha.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
NOTE r-oldrel-macos-arm64

installed package size

installed size is 36.8Mb
  sub-directories of 1Mb or more:
    libs  34.8Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is 38.0Mb
  sub-directories of 1Mb or more:
    libs  36.1Mb
NOTE r-patched-linux-x86_64

compiled code

File ‘misha/libs/misha.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.

Additional Issues

rchk Details →

Check History

NOTE 9 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is 36.3Mb
  sub-directories of 1Mb or more:
    libs  34.4Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is 37.5Mb
  sub-directories of 1Mb or more:
    libs  35.6Mb

Dependency Network

Dependencies Reverse dependencies magrittr curl digest ps yaml misha

Version History

updated 5.6.6 ← 5.4.5 diff Mar 19, 2026
new 5.4.5 Mar 10, 2026
updated 5.4.5 ← 5.4.0 diff Feb 19, 2026
updated 5.4.0 ← 5.3.2 diff Jan 26, 2026
updated 5.3.2 ← 5.3.1 diff Dec 13, 2025
updated 5.3.1 ← 4.3.12 diff Dec 9, 2025
updated 4.3.12 ← 4.3.11 diff Aug 30, 2025
updated 4.3.11 ← 4.3.6 diff Aug 24, 2025
updated 4.3.6 ← 4.2.9 diff Mar 5, 2025
updated 4.2.9 ← 4.2.8 diff Jan 14, 2024
updated 4.2.8 ← 4.2.6 diff Dec 4, 2023
updated 4.2.6 ← 4.2.3 diff Sep 13, 2023
new 4.2.3 Sep 4, 2023