mineCitrus
Extract and Analyze Median Molecule Intensity from 'citrus' Output
Description
Citrus is a computational technique developed for the analysis of high dimensional cytometry data sets. This package extracts, statistically analyzes, and visualizes marker expression from 'citrus' data. This code was used to generate data for Figures 3 and 4 in the forthcoming manuscript: Throm et al. “Identification of Enhanced Interferon-Gamma Signaling in Polyarticular Juvenile Idiopathic Arthritis with Mass Cytometry”, JCI-Insight. For more information on Citrus, please see: Bruggner et al. (2014) <doi:10.1073/pnas.1408792111>. To download the 'citrus' package, please see <https://github.com/nolanlab/citrus>.
Downloads
280
Last 30 days
17086th
622
Last 90 days
2.2K
Last year
Trend: +91.8% (30d vs prior 30d)
0
Last 30 days
50
Last 90 days
203
Last year
Trend: -100% (30d vs prior 30d)
7
Last 7 days
22
Last 30 days
5
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘Allison Throm <throm@wustl.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Allison",
family = "Throm",
role = c("aut", "cre"),
email = "throm@wustl.edu")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Allison Throm <throm@wustl.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Allison",
family = "Throm",
role = c("aut", "cre"),
email = "throm@wustl.edu")
as necessary.
Check History
NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Allison Throm <throm@wustl.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Allison",
family = "Throm",
role = c("aut", "cre"),
email = "throm@wustl.edu")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Allison Throm <throm@wustl.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Allison",
family = "Throm",
role = c("aut", "cre"),
email = "throm@wustl.edu")
as necessary.
installed package size
installed size is 5.6Mb
sub-directories of 1Mb or more:
data 5.5Mb
installed package size
installed size is 5.6Mb
sub-directories of 1Mb or more:
data 5.5Mb
Code & tests
Open call graph →Code intelligence has not been computed for this package yet.
Code
Structure
Lines of code
1,036
Files
39
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
13
Internal functions
0
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
100%
\dontrun example ratio
0%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
No
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.10
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
1
First release
2018-07-05
Latest release
2018-07-05
Avg cadence
–
Cold removal rate
–
Dep drift
0
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.
Dependency Network
Version History
1 trackedR Observatory began tracking this package on Mar 10, 2026; it first appeared on CRAN Jul 5, 2018. Releases before tracking aren’t shown.