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microeco

Microbial Community Ecology Data Analysis

v2.2.0 · May 14, 2026 · GPL-3

Description

A series of data analysis approaches for microbiome omics data based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity analysis, beta diversity analysis, differential abundance test, null model analysis, network analysis, machine learning, environmental data analysis and functional analysis.

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CRAN Check Status

13 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Reverse Dependencies (5)

suggests

Dependency Network

Dependencies Reverse dependencies R6 ape vegan rlang data.table magrittr dplyr tibble scales ggplot2 RColorBrewer reshape2 igraph lifecycle file2meco meconetcomp mecoturn LorMe SQMtools microeco

Version History

49 tracked
updated 2.2.0 ← 2.1.0 diff May 14, 2026
updated 2.1.0 ← 2.0.0 diff Apr 10, 2026
new 2.0.0 Mar 10, 2026
updated 2.0.0 ← 1.16.0 diff Jan 26, 2026
updated 1.16.0 ← 1.15.0 diff Oct 30, 2025
updated 1.15.0 ← 1.14.0 diff May 17, 2025
updated 1.14.0 ← 1.13.0 diff Mar 27, 2025
updated 1.13.0 ← 1.12.0 diff Feb 7, 2025
updated 1.12.0 ← 1.11.0 diff Jan 6, 2025
updated 1.11.0 ← 1.10.0 diff Dec 14, 2024
updated 1.10.0 ← 1.9.1 diff Oct 28, 2024
updated 1.9.1 ← 1.9.0 diff Aug 22, 2024
updated 1.9.0 ← 1.8.0 diff Aug 17, 2024
updated 1.8.0 ← 1.7.1 diff Jun 27, 2024
updated 1.7.1 ← 1.7.0 diff May 22, 2024