mashr
Multivariate Adaptive Shrinkage
Description
Implements the multivariate adaptive shrinkage (mash) method of Urbut et al (2019) <DOI:10.1038/s41588-018-0268-8> for estimating and testing large numbers of effects in many conditions (or many outcomes). Mash takes an empirical Bayes approach to testing and effect estimation; it estimates patterns of similarity among conditions, then exploits these patterns to improve accuracy of the effect estimates. The core linear algebra is implemented in C++ for fast model fitting and posterior computation.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
dependencies in R code
Namespace in Imports field not imported from: ‘softImpute’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘softImpute’ All declared Imports should be used.
Check History
NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
dependencies in R code
Namespace in Imports field not imported from: ‘softImpute’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘softImpute’ All declared Imports should be used.
installed package size
installed size is 8.3Mb
sub-directories of 1Mb or more:
libs 7.4Mb
installed package size
installed size is 9.0Mb
sub-directories of 1Mb or more:
libs 8.0Mb
ERROR 9 OK · 4 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
dependencies in R code
Namespace in Imports field not imported from: ‘softImpute’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘softImpute’ All declared Imports should be used.
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/mashr.Rcheck/00install.out' for details.
installed package size
installed size is 8.3Mb
sub-directories of 1Mb or more:
libs 7.4Mb
installed package size
installed size is 9.0Mb
sub-directories of 1Mb or more:
libs 8.0Mb
NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
dependencies in R code
Namespace in Imports field not imported from: ‘softImpute’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘softImpute’ All declared Imports should be used.
installed package size
installed size is 8.3Mb
sub-directories of 1Mb or more:
libs 7.4Mb
installed package size
installed size is 9.0Mb
sub-directories of 1Mb or more:
libs 8.0Mb
Code
Code metrics have not been computed for this package yet.