mascarade
Generating Cluster Masks for Single-Cell Dimensional Reduction Plots
v0.3.4
·
Apr 14, 2026
·
MIT + file LICENSE
Description
Implements a procedure to automatically generate 2D masks for clusters on dimensional reduction plots from methods like t-SNE (t-distributed stochastic neighbor embedding) or UMAP (uniform manifold approximation and projection), with a focus on single-cell RNA-sequencing data.
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CRAN Check Status
13
OK
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 10, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 9, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
re-building of vignette outputs
Error(s) in re-building vignettes: ... --- re-building ‘mascarade-gallery.Rmd’ using rmarkdown --- finished re-building ‘mascarade-gallery.Rmd’ --- re-building ‘mascarade-tutorial.Rmd’ using rmarkdown Quitting from mascarade-tutorial.Rmd:203-205 ...[truncated]... utorial.Rmd' failed with diagnostics: there is no package called 'Seurat' --- failed re-building ‘mascarade-tutorial.Rmd’ SUMMARY: processing the following file failed: ‘mascarade-tutorial.Rmd’ Error: Vignette re-building failed. Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 27, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE Mar 24, 2026
ERROR
r-release-windows-x86_64
examples
Running examples in 'mascarade-Ex.R' failed
The error most likely occurred in:
> ### Name: generateMaskSeurat
> ### Title: Generates mask from a Seurat object. Requires 'SeuratObject'
> ### package.
> ### Aliases: generateMaskSeurat
>
> ### ** Ex
...[truncated]...
rror in setnames(borderTable, c("x", "y"), colnames(dims)) :
Items of 'old' not found in column names: [x, y]. Consider skip_absent=TRUE.
Calls: generateMaskSeurat ... generateMask -> setnames -> stopf -> raise_condition -> signal
Execution halted
ERROR
r-oldrel-windows-x86_64
examples
Running examples in 'mascarade-Ex.R' failed
The error most likely occurred in:
> ### Name: generateMaskSeurat
> ### Title: Generates mask from a Seurat object. Requires 'SeuratObject'
> ### package.
> ### Aliases: generateMaskSeurat
>
> ### ** Ex
...[truncated]...
rror in setnames(borderTable, c("x", "y"), colnames(dims)) :
Items of 'old' not found in column names: [x, y]. Consider skip_absent=TRUE.
Calls: generateMaskSeurat ... generateMask -> setnames -> stopf -> raise_condition -> signal
Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 23, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE Mar 21, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
examples
Running examples in ‘mascarade-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: generateMaskSeurat
> ### Title: Generates mask from a Seurat object. Requires 'SeuratObject'
> ###
...[truncated]...
sider skip_absent=TRUE.
Calls: generateMaskSeurat ... generateMask -> setnames -> stopf -> raise_condition -> signal
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
fancyMask 4.848 0.135 7.847
ERROR
r-devel-linux-x86_64-fedora-clang
examples
Running examples in ‘mascarade-Ex.R’ failed
The error most likely occurred in:
> ### Name: generateMaskSeurat
> ### Title: Generates mask from a Seurat object. Requires 'SeuratObject'
> ### package.
> ### Aliases: generateMaskSeurat
>
> ### ** Ex
...[truncated]...
rror in setnames(borderTable, c("x", "y"), colnames(dims)) :
Items of 'old' not found in column names: [x, y]. Consider skip_absent=TRUE.
Calls: generateMaskSeurat ... generateMask -> setnames -> stopf -> raise_condition -> signal
Execution halted