mascarade
Generating Cluster Masks for Single-Cell Dimensional Reduction Plots
v0.3.3
·
Mar 24, 2026
·
MIT + file LICENSE
Description
Implements a procedure to automatically generate 2D masks for clusters on dimensional reduction plots from methods like t-SNE (t-distributed stochastic neighbor embedding) or UMAP (uniform manifold approximation and projection), with a focus on single-cell RNA-sequencing data.
Downloads
847
Last 30 days
4228th
1.9K
Last 90 days
1.9K
Last year
Trend: +75.4% (30d vs prior 30d)
CRAN Check Status
14
OK
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 27, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE Mar 24, 2026
ERROR
r-release-windows-x86_64
examples
Running examples in 'mascarade-Ex.R' failed
The error most likely occurred in:
> ### Name: generateMaskSeurat
> ### Title: Generates mask from a Seurat object. Requires 'SeuratObject'
> ### package.
> ### Aliases: generateMaskSeurat
>
> ### ** Ex
...[truncated]...
rror in setnames(borderTable, c("x", "y"), colnames(dims)) :
Items of 'old' not found in column names: [x, y]. Consider skip_absent=TRUE.
Calls: generateMaskSeurat ... generateMask -> setnames -> stopf -> raise_condition -> signal
Execution halted
ERROR
r-oldrel-windows-x86_64
examples
Running examples in 'mascarade-Ex.R' failed
The error most likely occurred in:
> ### Name: generateMaskSeurat
> ### Title: Generates mask from a Seurat object. Requires 'SeuratObject'
> ### package.
> ### Aliases: generateMaskSeurat
>
> ### ** Ex
...[truncated]...
rror in setnames(borderTable, c("x", "y"), colnames(dims)) :
Items of 'old' not found in column names: [x, y]. Consider skip_absent=TRUE.
Calls: generateMaskSeurat ... generateMask -> setnames -> stopf -> raise_condition -> signal
Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 23, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE Mar 21, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
examples
Running examples in ‘mascarade-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: generateMaskSeurat
> ### Title: Generates mask from a Seurat object. Requires 'SeuratObject'
> ###
...[truncated]...
sider skip_absent=TRUE.
Calls: generateMaskSeurat ... generateMask -> setnames -> stopf -> raise_condition -> signal
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
fancyMask 4.848 0.135 7.847
ERROR
r-devel-linux-x86_64-fedora-clang
examples
Running examples in ‘mascarade-Ex.R’ failed
The error most likely occurred in:
> ### Name: generateMaskSeurat
> ### Title: Generates mask from a Seurat object. Requires 'SeuratObject'
> ### package.
> ### Aliases: generateMaskSeurat
>
> ### ** Ex
...[truncated]...
rror in setnames(borderTable, c("x", "y"), colnames(dims)) :
Items of 'old' not found in column names: [x, y]. Consider skip_absent=TRUE.
Calls: generateMaskSeurat ... generateMask -> setnames -> stopf -> raise_condition -> signal
Execution halted